View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15992_low_5 (Length: 429)
Name: NF15992_low_5
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15992_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 26032341 - 26031919
Alignment:
| Q |
8 |
agtgagatgaactaaacttttacgatatgaaaaatcaatttatgaattttgactaaggatgtactcatatttaggatgagacacatcttgaatatgatga |
107 |
Q |
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| T |
26032341 |
agtgaaatgaactaaacttttacgatatgaaaaattaatttttgaattttgactaagtatgtactcatatttaggatgagacacatcttgaatatgatga |
26032242 |
T |
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| Q |
108 |
tctcaataaagaaactctatagggnnnnnnnttgagctggaagcagccggcaaagaaattttaatctactagtgttaagtttcaaaggccacctaacctc |
207 |
Q |
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| T |
26032241 |
tctcaataaagaaactctatagggaaaaaaattgagctggaagcagccggcaaagaaattttaatctactagtgttaagtttcaaaggccacctaacctt |
26032142 |
T |
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| Q |
208 |
tagttcaaata-ccatgttatatttttactcttttttaatttctatgtgtgtcccttaattatctgcattgaggtctatatttcctttgagaaaatgtta |
306 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26032141 |
tagttcaaatacccatgttatatttttactcttttttaatttctatgtgtgtcccttaattatctgcattgaggtctatatttcctttgagaaaatgtta |
26032042 |
T |
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| Q |
307 |
tgtgnnnnnnnagtagtttggtagatataaattcacatattaagagtgaataaggaatgtgtttgaggttcgaaccccgactcctgacatgtattatgta |
406 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
26032041 |
tgtgtttttttagtagtttggtagatataaattcacatattaagagtgaataagtaatgtgtttgaggttcgaaccccgactcctgatatatattatgtt |
26031942 |
T |
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| Q |
407 |
atttgtttatcaactgagctaca |
429 |
Q |
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| T |
26031941 |
atttgtttatcaactgagctaca |
26031919 |
T |
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