View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15992_low_9 (Length: 363)

Name: NF15992_low_9
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15992_low_9
NF15992_low_9
[»] scaffold0091 (3 HSPs)
scaffold0091 (221-335)||(29057-29172)
scaffold0091 (81-127)||(24710-24756)
scaffold0091 (81-127)||(28907-28953)
[»] scaffold0218 (2 HSPs)
scaffold0218 (222-335)||(14378-14492)
scaffold0218 (81-127)||(14227-14273)
[»] chr3 (9 HSPs)
chr3 (224-335)||(16642300-16642412)
chr3 (223-335)||(4712800-4712913)
chr3 (221-335)||(14062778-14062893)
chr3 (221-335)||(14055037-14055152)
chr3 (225-325)||(13926858-13926960)
chr3 (81-127)||(4713023-4713069)
chr3 (81-127)||(16642123-16642169)
chr3 (81-127)||(14055248-14055294)
chr3 (87-127)||(14063009-14063049)
[»] chr6 (4 HSPs)
chr6 (221-335)||(14989375-14989490)
chr6 (223-335)||(14980263-14980376)
chr6 (81-127)||(14980486-14980532)
chr6 (221-258)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (221-335)||(51658662-51658777)
chr1 (221-328)||(13882243-13882351)
chr1 (81-127)||(13882490-13882536)
chr1 (236-329)||(1567069-1567166)
chr1 (81-127)||(51658879-51658925)
[»] chr7 (9 HSPs)
chr7 (221-335)||(48376787-48376902)
chr7 (221-335)||(16060512-16060627)
chr7 (221-325)||(4531759-4531865)
chr7 (81-127)||(9080196-9080242)
chr7 (81-127)||(16060364-16060410)
chr7 (81-127)||(48376627-48376673)
chr7 (221-258)||(9080338-9080375)
chr7 (81-127)||(16069031-16069077)
chr7 (221-253)||(37946032-37946064)
[»] chr8 (6 HSPs)
chr8 (221-335)||(23658526-23658649)
chr8 (221-335)||(23657751-23657884)
chr8 (81-127)||(23657638-23657684)
chr8 (81-123)||(23658413-23658455)
chr8 (81-124)||(17862270-17862313)
chr8 (290-325)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (244-335)||(1-93)
[»] scaffold0003 (2 HSPs)
scaffold0003 (221-295)||(130795-130870)
scaffold0003 (81-127)||(130623-130669)
[»] scaffold0319 (1 HSPs)
scaffold0319 (267-335)||(13570-13638)
[»] chr2 (1 HSPs)
chr2 (221-325)||(23656470-23656576)
[»] scaffold0063 (2 HSPs)
scaffold0063 (81-127)||(28482-28528)
scaffold0063 (221-259)||(28342-28380)
[»] scaffold1043 (1 HSPs)
scaffold1043 (81-126)||(1449-1494)
[»] scaffold0061 (1 HSPs)
scaffold0061 (81-124)||(18128-18171)
[»] chr4 (2 HSPs)
chr4 (242-311)||(3576240-3576311)
chr4 (81-124)||(19728471-19728514)


Alignment Details
Target: scaffold0091 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 29057 - 29172
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  320 cctcattattcatctc 335  Q
    ||||||||||||||||    
T  29157 cctcattattcatctc 29172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 24710 - 24756
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  24710 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 24756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 28907 - 28953
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  28907 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 28953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 14378 - 14492
Alignment:
Q  222 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  321 ctcattattcatctc 335  Q
    |||||||||||||||    
T  14478 ctcattattcatctc 14492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 14227 - 14273
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||    
T  14227 atgtatattagacaccatcatataagtcatcatcataattatacgtc 14273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 16642300 - 16642412
Alignment:
Q  224 atcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcct 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcct 16642399  T
Q  323 cattattcatctc 335  Q
    |||||||||||||    
T  16642400 cattattcatctc 16642412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 4712913 - 4712800
Alignment:
Q  223 catcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  322 tcattattcatctc 335  Q
    ||||||||||||||    
T  4712813 tcattattcatctc 4712800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 14062893 - 14062778
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| | |    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaat 14062794  T
Q  320 cctcattattcatctc 335  Q
    ||||||||||||||||    
T  14062793 cctcattattcatctc 14062778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 14055152 - 14055037
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||  | |    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaat 14055053  T
Q  320 cctcattattcatctc 335  Q
    ||||||||||||||||    
T  14055052 cctcattattcatctc 14055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 13926960 - 13926858
Alignment:
Q  225 tcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtattcct 322  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||| || |||||||||||  | ||||||||||||| |||||||||| ||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcct 13926861  T
Q  323 cat 325  Q
    |||    
T  13926860 cat 13926858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 4713069 - 4713023
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  4713069 atgtatattagacaccatcattcaagttatcatcataattatacgtc 4713023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 16642123 - 16642169
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  16642123 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 16642169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 14055294 - 14055248
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||    
T  14055294 atgtatattagacatcatcattcaagtcatcatcataattatacgtc 14055248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 14063049 - 14063009
Alignment:
Q  87 attagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  14063049 attagacaccatcattcaagtcatcatcataattatacgtc 14063009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 14989490 - 14989375
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  320 cctcattattcatctc 335  Q
    | ||||||||||||||    
T  14989390 cgtcattattcatctc 14989375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 14980376 - 14980263
Alignment:
Q  223 catcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  322 tcattattcatctc 335  Q
    ||||||||||||||    
T  14980276 tcattattcatctc 14980263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 14980532 - 14980486
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14980532 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 14980486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcat 258  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 51658777 - 51658662
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  320 cctcattattcatctc 335  Q
    ||||||||||||||||    
T  51658677 cctcattattcatctc 51658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 13882351 - 13882243
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  320 cctcattat 328  Q
    |||||||||    
T  13882251 cctcattat 13882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 13882536 - 13882490
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  13882536 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 13882490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 1567166 - 1567069
Alignment:
Q  236 atataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc-ttcgtcatcactcttcgtcac-attatgt-attcctcattatt 329  Q
    ||||||| ||| ||||||||||||||||||| ||  |||||| |||||||||||  |||||||||||||| ||||| ||||| | |||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattatt 1567069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 51658925 - 51658879
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    |||||||||||| | |||| ||||||| |||||||||||||||||||    
T  51658925 atgtatattagatatcatcgttcaagtcatcatcataattatacgtc 51658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 48376787 - 48376902
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  |||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagatt 48376886  T
Q  320 cctcattattcatctc 335  Q
    ||||||||||||||||    
T  48376887 cctcattattcatctc 48376902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 16060512 - 16060627
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 319  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| || |||||||||  |||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagatt 16060611  T
Q  320 cctcattattcatctc 335  Q
    ||||||||||||||||    
T  16060612 cctcattattcatctc 16060627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 4531865 - 4531759
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttattaatt-acatgtatataatatct-tcgtcatcactcttcgtcacattatgtat 318  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||| ||| |||| |||||||||||  | |||||||||||||||||||||||| ||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  319 tcctcat 325  Q
    |||||||    
T  4531765 tcctcat 4531759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 9080196 - 9080242
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  9080196 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 9080242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 16060364 - 16060410
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  16060364 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 16060410  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 48376627 - 48376673
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  48376627 atgtatattagacaccatcatttaagtcatcatcataattatacgtc 48376673  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcat 258  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 16069077 - 16069031
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    |||||||||||||| |||||||||| | |||||||||||||||||||    
T  16069077 atgtatattagacatcatcattcaaatcatcatcataattatacgtc 16069031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  221 ctcatcatcactaacatataaacattatcattt 253  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 23658526 - 23658649
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattaca--------tgtatataatatcttcgtcatcactcttcgtcacat 311  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||        | ||||||||||||||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  312 tatgtattcctcattattcatctc 335  Q
    |||| |||||||||||||||||||    
T  23658626 tatggattcctcattattcatctc 23658649  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 23657751 - 23657884
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtata------------------taatatcttcgtcatcactc 301  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||                  ||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatatatatatatatatatatataatatcttcgtcatcactc 23657850  T
Q  302 ttcgtcacattatgtattcctcattattcatctc 335  Q
    |||||||||||||| |||||||||||||||||||    
T  23657851 ttcgtcacattatggattcctcattattcatctc 23657884  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 23657638 - 23657684
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  23657638 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 23657684  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 23658413 - 23658455
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattata 123  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  23658413 atgtatattagacaccatcattcaagtcatcatcataattata 23658455  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 17862313 - 17862270
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatac 124  Q
    |||||||||||||| |||||||||| | ||||||||||||||||    
T  17862313 atgtatattagacatcatcattcaaatcatcatcataattatac 17862270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 29293929 - 29293964
Alignment:
Q  290 tcgtcatcactcttcgtcacattatgtattcctcat 325  Q
    |||||||||||||||||||||||||| |||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctcat 29293964  T

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Target: scaffold1269 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 1 - 93
Alignment:
Q  244 attatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctc 335  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcatctc 93  T

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Target: scaffold0003 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 130623 - 130669
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  130623 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 130669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 13638 - 13570
Alignment:
Q  267 ttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctc 335  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  13638 ttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcatctc 13570  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 23656576 - 23656470
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatcgtatttattaa-ttacatgtatataatatct-tcgtcatcactcttcgtcacattatgtat 318  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||| | || ||| |||||||||||  |||||||||||||||||||||||||| ||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggat 23656477  T
Q  319 tcctcat 325  Q
    |||||||    
T  23656476 tcctcat 23656470  T

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Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 28528 - 28482
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 127  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||    
T  28528 atgtatattagacaccatcattcaattcatcatcataattatacgtc 28482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  221 ctcatcatcactaacatataaacattatcatttctcatc 259  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 1494 - 1449
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatacgt 126  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||    
T  1494 atgtatattagacatcatcattcaaatcatcatcataattatacgt 1449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 18171 - 18128
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatac 124  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||    
T  18171 atgtatattagataccatcattcaagtcatcatcataatcatac 18128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  242 acattatcatttctcatcgtatttattaat-tacatgtatataatatct-tcgtcatcactcttcgtcacat 311  Q
    |||| ||||| |||||||||||||||| || ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 19728514 - 19728471
Alignment:
Q  81 atgtatattagacaccatcattcaagtgatcatcataattatac 124  Q
    |||||||||||||| |||||||||| | ||||||||||||||||    
T  19728514 atgtatattagacatcatcattcaaatcatcatcataattatac 19728471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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