View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15993_high_10 (Length: 250)

Name: NF15993_high_10
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15993_high_10
NF15993_high_10
[»] chr8 (8 HSPs)
chr8 (1-243)||(4008077-4008319)
chr8 (4-81)||(6212930-6213007)
chr8 (112-180)||(39187785-39187859)
chr8 (105-155)||(2797715-2797765)
chr8 (105-155)||(2847497-2847547)
chr8 (105-155)||(3160649-3160699)
chr8 (105-162)||(2889023-2889080)
chr8 (105-162)||(3145782-3145839)
[»] chr3 (2 HSPs)
chr3 (1-85)||(521635-521719)
chr3 (5-85)||(13017629-13017709)
[»] chr6 (1 HSPs)
chr6 (6-85)||(14234234-14234313)
[»] chr1 (2 HSPs)
chr1 (4-85)||(31466654-31466735)
chr1 (1-85)||(33738620-33738700)
[»] chr4 (1 HSPs)
chr4 (1-77)||(39631574-39631651)
[»] chr7 (1 HSPs)
chr7 (9-85)||(33842889-33842964)
[»] chr5 (1 HSPs)
chr5 (18-81)||(30088030-30088093)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4008077 - 4008319
Alignment:
Q  1 ttcacacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaattttttagggtatggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4008077 ttcacacattacaaccataatataacacaccaatgaataactaccttcctataactactaataatttcataaaactactactaattttttagggtatggt 4008176  T
Q  101 tttttgtctcccatcttatagaaaaccacttctcttgtttactaacaataataatcaataaccgagttttacatgaacaaacagtttcaggagctgaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4008177 tttttgtctcccatcttatagaaaaccacttctcttgtttactaacaataataatcaataaccgagttttacatgaacaaacagtttcaggagctgaagc 4008276  T
Q  201 acaagatgtgaagttgaagtcaaaatatggtttattttcttcg 243  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  4008277 acaagatgtgaagttgaagtcaaaatatggtttattttgttcg 4008319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 6212930 - 6213007
Alignment:
Q  4 acacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactac 81  Q
    ||||||||||| | ||||||||||||||||| |||||||| |||||| |||| |||||||| ||||||||||||||||    
T  6212930 acacattacaatcttaatataacacaccaataaataactaacttcctataacaactaataacttcataaaactactac 6213007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 39187859 - 39187785
Alignment:
Q  112 catcttatagaaaaccacttctcttgtttactaacaataataat------caataaccgagttttacatgaacaa 180  Q
    |||||||||||||| || |||||||||||||||| |||||||||      |||||||||||||||||||||||||    
T  39187859 catcttatagaaaatcaattctcttgtttactaataataataataataatcaataaccgagttttacatgaacaa 39187785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 2797715 - 2797765
Alignment:
Q  105 tgtctcccatcttatagaaaaccacttctcttgtttactaacaataataat 155  Q
    ||||||||||||||||||||| |||  |||||||||| ||| |||||||||    
T  2797715 tgtctcccatcttatagaaaatcacacctcttgtttaataataataataat 2797765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 2847547 - 2847497
Alignment:
Q  105 tgtctcccatcttatagaaaaccacttctcttgtttactaacaataataat 155  Q
    ||||||||||||||||||||| ||| ||| ||||||| ||| |||||||||    
T  2847547 tgtctcccatcttatagaaaatcacatcttttgtttaataataataataat 2847497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 3160649 - 3160699
Alignment:
Q  105 tgtctcccatcttatagaaaaccacttctcttgtttactaacaataataat 155  Q
    ||||||||||||||||||||| ||| ||| ||||||| ||| |||||||||    
T  3160649 tgtctcccatcttatagaaaatcacatcttttgtttaataataataataat 3160699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 2889080 - 2889023
Alignment:
Q  105 tgtctcccatcttatagaaaaccacttctcttgtttactaacaataataatcaataac 162  Q
    ||||||||||||||||||||| ||| ||||||||||| ||  | ||||||||| ||||    
T  2889080 tgtctcccatcttatagaaaatcacatctcttgtttaataggagtaataatcagtaac 2889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 3145782 - 3145839
Alignment:
Q  105 tgtctcccatcttatagaaaaccacttctcttgtttactaacaataataatcaataac 162  Q
    ||||||||||||||||||||| ||| ||||||||||| ||  | ||||||||| ||||    
T  3145782 tgtctcccatcttatagaaaatcacatctcttgtttaatagaagtaataatcagtaac 3145839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 521635 - 521719
Alignment:
Q  1 ttcacacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat 85  Q
    |||||||||||||||| ||||||||||||||||| | |||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  521635 ttcacacattacaaccttaatataacacaccaataagtaactaacttcctataactactaataacttcataaaactactactaat 521719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 13017709 - 13017629
Alignment:
Q  5 cacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat 85  Q
    |||| ||||||| ||||||||||||||||| | ||||||||||| | ||||||||||||| |||| ||| |||||||||||    
T  13017709 cacaatacaaccttaatataacacaccaataagtaactaccttcttataactactaataacttcacaaagctactactaat 13017629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 14234313 - 14234234
Alignment:
Q  6 acattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat 85  Q
    ||||||||| | ||||||||||||||||| | ||||||| ||||| ||||||||||||  ||||||||||||||||||||    
T  14234313 acattacaatcttaatataacacaccaataagtaactacattcctataactactaatagcttcataaaactactactaat 14234234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 31466654 - 31466735
Alignment:
Q  4 acacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat 85  Q
    ||||||||||| | ||||||||||||||||| | |||||| |||||| |||||||| |||  ||||||||||||||||||||    
T  31466654 acacattacaatcttaatataacacaccaataagtaactaacttcctataactacttatagcttcataaaactactactaat 31466735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 33738620 - 33738700
Alignment:
Q  1 ttcacacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat 85  Q
    |||||||||||||||| |||||||||| |||||| | |||||||||||    |  ||||||||| ||||||||||||||||||||    
T  33738620 ttcacacattacaaccttaatataacataccaataagtaactaccttc----atatactaataacttcataaaactactactaat 33738700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39631574 - 39631651
Alignment:
Q  1 ttcacacattacaaccataa-tataacacaccaatgaataactaccttcctgtaactactaataatttcataaaacta 77  Q
    |||||||||||||||  ||| |||||||||||||| |||||||||||| || ||||||||||||| ||| ||||||||    
T  39631574 ttcacacattacaactttaaatataacacaccaataaataactaccttgctataactactaataacttcttaaaacta 39631651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 33842964 - 33842889
Alignment:
Q  9 ttacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat 85  Q
    |||||||| |||||||||||| |||| | ||||||||||| | |||| ||||||||||||||||||||| |||||||    
T  33842964 ttacaaccttaatataacacatcaataagtaactaccttc-tataacaactaataatttcataaaactattactaat 33842889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 30088093 - 30088030
Alignment:
Q  18 taatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactac 81  Q
    |||||||||||||||||   |||||| |||  | ||||||||||||| ||||||||||||||||    
T  30088093 taatataacacaccaatatgtaactatctttttataactactaataacttcataaaactactac 30088030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University