View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15993_high_2 (Length: 496)

Name: NF15993_high_2
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15993_high_2
NF15993_high_2
[»] chr8 (15 HSPs)
chr8 (141-379)||(31594751-31594989)
chr8 (355-480)||(40528816-40528941)
chr8 (11-79)||(31594629-31594697)
chr8 (370-480)||(3946308-3946418)
chr8 (360-474)||(17775307-17775421)
chr8 (370-480)||(32954908-32955018)
chr8 (370-480)||(37657057-37657167)
chr8 (365-456)||(33107755-33107846)
chr8 (368-456)||(44061809-44061897)
chr8 (367-454)||(9629657-9629744)
chr8 (365-455)||(37172153-37172243)
chr8 (414-480)||(44064425-44064491)
chr8 (365-462)||(44090972-44091069)
chr8 (360-436)||(15716859-15716935)
chr8 (368-468)||(30260855-30260955)
[»] chr7 (13 HSPs)
chr7 (367-474)||(49103479-49103586)
chr7 (370-480)||(22638777-22638887)
chr7 (370-480)||(31711830-31711940)
chr7 (370-480)||(37899391-37899501)
chr7 (370-480)||(37899106-37899216)
chr7 (360-456)||(33845134-33845230)
chr7 (370-432)||(10578183-10578245)
chr7 (370-456)||(37905926-37906012)
chr7 (365-462)||(2008720-2008817)
chr7 (405-456)||(49128909-49128960)
chr7 (365-462)||(12007074-12007171)
chr7 (408-449)||(31487290-31487331)
chr7 (406-455)||(32777636-32777685)
[»] chr4 (12 HSPs)
chr4 (367-479)||(29974218-29974330)
chr4 (370-480)||(51225418-51225528)
chr4 (370-480)||(2401678-2401788)
chr4 (370-456)||(42062525-42062611)
chr4 (365-462)||(18316023-18316120)
chr4 (372-450)||(37173698-37173776)
chr4 (395-471)||(7209361-7209437)
chr4 (406-474)||(49365213-49365280)
chr4 (405-480)||(10780011-10780085)
chr4 (405-480)||(10973620-10973694)
chr4 (368-474)||(17367250-17367356)
chr4 (365-462)||(29227131-29227228)
[»] chr1 (11 HSPs)
chr1 (370-472)||(37178084-37178186)
chr1 (374-474)||(41197974-41198074)
chr1 (360-474)||(19442585-19442699)
chr1 (395-456)||(43893349-43893411)
chr1 (373-454)||(48788200-48788280)
chr1 (370-480)||(45065795-45065905)
chr1 (368-433)||(45008055-45008120)
chr1 (408-461)||(5507317-5507370)
chr1 (372-433)||(5617670-5617730)
chr1 (365-462)||(40439728-40439825)
chr1 (407-455)||(7918992-7919040)
[»] chr3 (14 HSPs)
chr3 (370-479)||(54260097-54260206)
chr3 (365-462)||(4494125-4494222)
chr3 (395-474)||(14207178-14207255)
chr3 (395-474)||(14214926-14215003)
chr3 (406-469)||(1340111-1340174)
chr3 (368-436)||(54870485-54870553)
chr3 (406-480)||(30567889-30567963)
chr3 (368-450)||(36728052-36728134)
chr3 (368-456)||(31446002-31446088)
chr3 (408-449)||(32631489-32631530)
chr3 (368-448)||(37780411-37780491)
chr3 (406-454)||(41443120-41443168)
chr3 (372-453)||(33374588-33374669)
chr3 (370-430)||(48346944-48347004)
[»] chr6 (6 HSPs)
chr6 (370-480)||(28748180-28748290)
chr6 (369-448)||(10053051-10053130)
chr6 (367-462)||(18064980-18065075)
chr6 (370-432)||(1271404-1271466)
chr6 (408-462)||(29459033-29459087)
chr6 (418-470)||(8505715-8505767)
[»] chr5 (12 HSPs)
chr5 (370-480)||(8920146-8920256)
chr5 (370-480)||(41173320-41173430)
chr5 (395-472)||(29463071-29463148)
chr5 (406-466)||(31748418-31748478)
chr5 (358-462)||(39195830-39195934)
chr5 (405-468)||(3109400-3109463)
chr5 (370-449)||(15884644-15884723)
chr5 (407-470)||(42446221-42446284)
chr5 (368-462)||(12739858-12739951)
chr5 (368-462)||(12802681-12802774)
chr5 (370-472)||(21922038-21922140)
chr5 (372-462)||(38363441-38363535)
[»] chr2 (13 HSPs)
chr2 (370-480)||(6646891-6647001)
chr2 (368-480)||(6511448-6511560)
chr2 (368-455)||(33414536-33414623)
chr2 (370-480)||(2971708-2971818)
chr2 (368-452)||(33412885-33412969)
chr2 (370-462)||(32972798-32972890)
chr2 (405-480)||(44821888-44821963)
chr2 (370-480)||(33045611-33045721)
chr2 (370-456)||(30977980-30978065)
chr2 (405-471)||(40504303-40504369)
chr2 (408-480)||(9194497-9194570)
chr2 (405-462)||(44018326-44018383)
chr2 (414-462)||(14871724-14871772)
[»] scaffold0034 (1 HSPs)
scaffold0034 (371-480)||(22646-22755)
[»] scaffold0178 (1 HSPs)
scaffold0178 (398-479)||(3770-3851)
[»] scaffold0100 (1 HSPs)
scaffold0100 (406-480)||(44842-44916)
[»] scaffold0343 (1 HSPs)
scaffold0343 (395-430)||(8957-8992)
[»] scaffold0618 (1 HSPs)
scaffold0618 (365-462)||(8841-8938)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 141 - 379
Target Start/End: Original strand, 31594751 - 31594989
Alignment:
Q  141 cgtttggattgtgtaagagcgtttgtatgtttatgatgaggattgaagattttattcttagtttcgtcaattttgaagcttgattattggaagtaaatat 240  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  31594751 cgtttggattgtgtaagagcgattgtatgtttatgatgaggattgaagattttattcttaatttcgtcaattttgaagcttgattattgaaagtaaatat 31594850  T
Q  241 agatgaggttcacaccggtgcagaaaagaaatttaagattggtcatagtggatcttttaagtcggtcataaaacatggtgtaaatagcatgttacaagaa 340  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31594851 agatgaggttcacaccggtgtagaaaagaaatttaagattggttatagtggatcttttaagtcggtcataaaacatggtgtaaatagcatgttacaagaa 31594950  T
Q  341 ttattgttacaacaatcctaaaacagcaatgttatttga 379  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  31594951 ttattgttacaacaatcctaaaagagcaatgttatttga 31594989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 355 - 480
Target Start/End: Complemental strand, 40528941 - 40528816
Alignment:
Q  355 atcctaaaacagcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaa 454  Q
    |||||| | ||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||   ||| ||| ||||    
T  40528941 atcctatatcagcaatgttatttgaacaaccatttcataagataatttgggggacaaccaaaatatacaaggaaatgtaggtcttgaaacacaaaccaaa 40528842  T
Q  455 gctatagatagaaaaaatgacaatat 480  Q
    |||||||||||| ||||||| |||||    
T  40528841 gctatagatagagaaaatgagaatat 40528816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 31594629 - 31594697
Alignment:
Q  11 aggagcagagatagaaagaatcgagtgtgaaattgtaagagaaagaaacataagaattttaatgtgtac 79  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  31594629 aggagtagagataaaaagaaacgagtgtgaaattgtaagagaaagaaacataagaatttcaatgtgtac 31594697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 3946418 - 3946308
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| ||||||||||||||||| ||||||||||  ||||| ||||||||| |||||| ||||| ||| ||    
T  3946418 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaa 3946319  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  3946318 aatgagaatat 3946308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 474
Target Start/End: Original strand, 17775307 - 17775421
Alignment:
Q  360 aaaacagcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctat 459  Q
    |||| |||||||||||||||| |||||||| ||   |||| |||  ||||||| ||||||||||||||||| ||| ||||  |||||||| ||||||  |    
T  17775307 aaaaaagcaatgttatttgaacaactattttatgtaacaacttgtaggacaactaaaatatacaaagaaatatagatcttgacacaaaaaccaaagcact 17775406  T
Q  460 agatagaaaaaatga 474  Q
    ||| ||| |||||||    
T  17775407 agagagagaaaatga 17775421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 32955018 - 32954908
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| |||| ||| ||||| |||  | |||||||||||||| ||||||||||  |||||  |||||||| |||||| ||||| ||| ||    
T  32955018 tgttatttgaacaaccattttataggacaacttgtagtacaaccaaaatatagaaagaaatgtgagtcttgacacaaaaaccaaagcaatagagagagaa 32954919  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  32954918 aatgagaatat 32954908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 37657167 - 37657057
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||||||||  || ||||| ||  |||||||||||||||||  |||||||||  ||||| ||||||||| |||||| | ||| ||| ||    
T  37657167 tgttatttgaacaactattttgtatgacaacttcagggacaaccaaaatatagtaagaaatgtgagtcttggcacaaaaaccaaagcaacagagagagaa 37657068  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  37657067 aatgagaatat 37657057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 33107755 - 33107846
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    |||||||||||||||| |||  ||| ||  |||||||||  ||||||||| | ||||||||||||| |||||  ||||||||| ||||||||    
T  33107755 agcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagttgcacaaatatcaaagc 33107846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 44061897 - 44061809
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    ||||||||||||| ||||||||| |  || ||||||  ||||||||||| ||||||||||||| ||| |  |  |||||||||||||||    
T  44061897 aatgttatttgaacaactatttcttgtgataatttgttggacaaccaaattatacaaagaaatttagatagtgacacaaaaatcaaagc 44061809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 454
Target Start/End: Complemental strand, 9629744 - 9629657
Alignment:
Q  367 caatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaa 454  Q
    |||||||||||||| |||| ||||  | ||||| |||  ||||||||||| ||||||||||||| | | |  ||||||||||||||||    
T  9629744 caatgttatttgaacaactttttctcatgacaacttgttggacaaccaaattatacaaagaaatttggataattgcacaaaaatcaaa 9629657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 37172243 - 37172153
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaag 455  Q
    |||||||||||||||| || | |||| |   ||||||||  ||||||||||| ||||||||||||| |||||  |  ||||||||||||||    
T  37172243 agcaatgttatttgaacaattttttcttgtaacaatttgttggacaaccaaattatacaaagaaatttaggtaatgacacaaaaatcaaag 37172153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 480
Target Start/End: Complemental strand, 44064491 - 44064425
Alignment:
Q  414 aaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaatat 480  Q
    |||||||| ||| ||||||| |||||  ||||||||||||||| ||||| ||| ||||||| |||||    
T  44064491 aaaatatagaaaaaaatgtaagtcttgacacaaaaatcaaagcaatagagagagaaaatgagaatat 44064425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 462
Target Start/End: Complemental strand, 44091069 - 44090972
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||||| |||  ||||||  ||||| ||   ||||||||| | ||||||||||||| |||||  |  ||||||||||||||| |||||    
T  44091069 agcaatgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagcaataga 44090972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 15716859 - 15716935
Alignment:
Q  360 aaaacagcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggt 436  Q
    |||| |||||||||||||||| |||| ||| ||  ||||| |||  ||||||||| | ||||||||||||| |||||    
T  15716859 aaaagagcaatgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggt 15716935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 30260955 - 30260855
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaa 467  Q
    |||||||||| || |||||||| | | ||||| ||| | |||||| |||||||| |||||||||||| | ||  |||||||  |||||| ||||| ||||    
T  30260955 aatgttatttaaacaactattttacatgacaacttgtgagacaactaaaatatataaagaaatgtagattttaacacaaaatgcaaagcaatagagagaa 30260856  T
Q  468 a 468  Q
    |    
T  30260855 a 30260855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 49103479 - 49103586
Alignment:
Q  367 caatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagataga 466  Q
    |||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||  |||||||| ||||||||||||||||    
T  49103479 caatgttatttgaataaccatttcatgagacaacttgtgggacaaccaaaatatacaaagaaatgtatgtcttgacacaaaaaccaaagctatagataga 49103578  T
Q  467 aaaaatga 474  Q
     |||||||    
T  49103579 gaaaatga 49103586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 22638777 - 22638887
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| ||||||| ||||||||| ||||||||||  ||||| ||||||||| |||||||||||  | ||||    
T  22638777 tgttatttgaacaaccattttgtaggacaacttgtgggacaatcaaaatatagaaagaaatgttagtcttggcacaaaaaccaaagctatagtgaaaaaa 22638876  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  22638877 aatgagaatat 22638887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 31711830 - 31711940
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || || |||||| ||||||||||||||||| ||||||||||  ||||| ||||||||| |||| | ||||| ||| ||    
T  31711830 tgttatttgaacaaccattttgtaggataatttgtgggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaaacaatagagagagaa 31711929  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  31711930 aatgaaaatat 31711940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 37899501 - 37899391
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| |||||||||||||||||  |||||||||  ||||| ||||||||| |||||| ||||| ||| ||    
T  37899501 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagtaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaa 37899402  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  37899401 aatgagaatat 37899391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 37899106 - 37899216
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| |||||||||||||||||  |||||||||   |||| ||||||||| |||||| ||||| ||| ||    
T  37899106 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagtaagaaatgtgaatcttggcacaaaaaccaaagcaatagagagagaa 37899205  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  37899206 aatgagaatat 37899216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 456
Target Start/End: Complemental strand, 33845230 - 33845134
Alignment:
Q  360 aaaacagcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    |||| |||||||||||||||| |||  ||||||  |||||||||  ||||||||| | ||||||||||||| |||||  |  |||||||||||||||    
T  33845230 aaaagagcaatgttatttgaacaaccttttcatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagc 33845134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 10578245 - 10578183
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgt 432  Q
    ||||||||||| ||||||||  || || |||||| ||||||||||||||||| ||||||||||    
T  10578245 tgttatttgaacaactattttgtaggataatttgtgggacaaccaaaatatagaaagaaatgt 10578183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 456
Target Start/End: Complemental strand, 37906012 - 37905926
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    ||||||||||| ||| ||||  || ||||| ||| |||||||||||||||||  |||||||||  ||||| ||||||||| ||||||    
T  37906012 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagtaagaaatgtgagtcttggcacaaaaaccaaagc 37905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 2008720 - 2008817
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||||| ||| |||| ||  ||||| |||  ||||||||| | ||||||||||||| |||||  | ||||||| |||||||| |||||    
T  2008720 agcaatgttatttgaacaaccattttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaataga 2008817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 456
Target Start/End: Original strand, 49128909 - 49128960
Alignment:
Q  405 gggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    |||||||||||||||||||||||||| ||||  ||  |||||||||||||||    
T  49128909 gggacaaccaaaatatacaaagaaatataggcattaacacaaaaatcaaagc 49128960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 12007074 - 12007171
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||| | ||||||||  |  ||||| |||  ||||||||||| | ||||||||||| ||| |  | |||||||||||||||| |||||    
T  12007074 agcaatgttatttgtacaactatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggcacaaaaatcaaagcaataga 12007171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 31487331 - 31487290
Alignment:
Q  408 acaaccaaaatatacaaagaaatgtaggtctttgcacaaaaa 449  Q
    ||||||||||| ||||||||||||||||||||  ||||||||    
T  31487331 acaaccaaaatttacaaagaaatgtaggtcttgacacaaaaa 31487290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 32777636 - 32777685
Alignment:
Q  406 ggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaag 455  Q
    ||||||||||| ||||||||||||| |||||  | |||||||||||||||    
T  32777636 ggacaaccaaattatacaaagaaatttaggtagtggcacaaaaatcaaag 32777685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 367 - 479
Target Start/End: Original strand, 29974218 - 29974330
Alignment:
Q  367 caatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagataga 466  Q
    |||| ||||||||| ||||||||||||||| ||||||  |||||| |||||||||||||||||||||||| || | ||| ||| |||| |||||||||||    
T  29974218 caatattatttgaacaactatttcataagataatttggaggacaatcaaaatatacaaagaaatgtaggttttggtacacaaaccaaaactatagataga 29974317  T
Q  467 aaaaatgacaata 479  Q
     ||||||| ||||    
T  29974318 gaaaatgagaata 29974330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 51225418 - 51225528
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| |||||||| |||| |||| ||| ||||||||||||||||| ||||||||||  ||||| ||||||||| |||||  ||||| ||| ||    
T  51225418 tgttatttgaacaactattttataaaacaacttgtgggacaaccaaaatataaaaagaaatgtgagtcttggcacaaaaaccaaagtaatagagagagaa 51225517  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  51225518 aatgagaatat 51225528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 2401788 - 2401678
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| |||||||||||||||||  |||||||||  ||||| ||||||||| |||||| ||||| ||| ||    
T  2401788 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagtaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaa 2401689  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  2401688 aatgaaaatat 2401678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 456
Target Start/End: Original strand, 42062525 - 42062611
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    ||||||||||| ||| |||| ||  ||||| ||| ||||||||||||||||||||||||||||  ||||  ||||||||||||||||    
T  42062525 tgttatttgaacaaccattttatgggacaacttgtgggacaaccaaaatatacaaagaaatgtgagtctaggcacaaaaatcaaagc 42062611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 462
Target Start/End: Complemental strand, 18316120 - 18316023
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||||| ||| ||||| || ||||| |||  ||||||||||| ||||||||||||| |||||  |  ||||||||||||||| |||||    
T  18316120 agcaatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaataga 18316023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 450
Target Start/End: Complemental strand, 37173776 - 37173698
Alignment:
Q  372 ttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaat 450  Q
    ||||||||| ||||||||| || ||||||||| ||||||||||||||| | | | |||||||||  |||||| ||||||    
T  37173776 ttatttgaacaactatttcttaggacaatttgtgggacaaccaaaataaatatataaatgtaggcatttgcataaaaat 37173698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 7209437 - 7209361
Alignment:
Q  395 gacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaa 471  Q
    ||||| ||| || |||||||||||||||||||||||||| || ||  |||||||| ||||||  |||| ||||||||    
T  7209437 gacaacttgtggaacaaccaaaatatacaaagaaatgtaagttttgccacaaaaaccaaagcactagagagaaaaaa 7209361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 49365280 - 49365213
Alignment:
Q  406 ggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatga 474  Q
    ||||||||||||||| ||||||||| |||||| ||| |||||||||||||  ||||| ||| |||||||    
T  49365280 ggacaaccaaaatatgcaaagaaatataggtc-ttgtacaaaaatcaaagtaatagagagagaaaatga 49365213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 10780011 - 10780085
Alignment:
Q  405 gggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaatat 480  Q
    ||||||||||||||||||||||||| ||  ||||  |||||||||||||||| || || ||| ||||||| |||||    
T  10780011 gggacaaccaaaatatacaaagaaa-gtgagtctaggcacaaaaatcaaagcaatggagagagaaaatgaaaatat 10780085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 10973620 - 10973694
Alignment:
Q  405 gggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaatat 480  Q
    ||||||||||||||||||||||||| ||  ||||  |||||||||||||||| || || ||| ||||||| |||||    
T  10973620 gggacaaccaaaatatacaaagaaa-gtgagtctaggcacaaaaatcaaagcaatggagagagaaaatgaaaatat 10973694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 474
Target Start/End: Original strand, 17367250 - 17367356
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaa 467  Q
    ||||||||||||| ||| |||| |||  |||||||| |  ||||||||||||||||||  ||| | ||||||  |||||||| |||| | ||||| |||     
T  17367250 aatgttatttgaataaccattttatagtacaatttgtgaaacaaccaaaatatacaaaagaatattggtcttgacacaaaaaccaaatcaatagagagag 17367349  T
Q  468 aaaatga 474  Q
    |||||||    
T  17367350 aaaatga 17367356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 29227131 - 29227228
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||||| |||  ||| ||  |||||||||  ||||||||| | ||||||||||||| |||||  |  |||||| |||||||| |||||    
T  29227131 agcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccatattatacaaagaaatttaggtagtgacacaaatatcaaagcaataga 29227228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 37178084 - 37178186
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| |||  ||||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||| ||||| ||||| ||| ||    
T  37178084 tgttatttgaataaccattatataagacaatttgcgggacaatcaaaatattcaaagaaatgtaggtctaggcacaaaaattaaagcaatagagagagaa 37178183  T
Q  470 aat 472  Q
    |||    
T  37178184 aat 37178186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 474
Target Start/End: Complemental strand, 41198074 - 41197974
Alignment:
Q  374 atttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatg 473  Q
    ||||||| ||| || | ||| ||||| ||| ||||||||||||| ||||||||||||||| ||||| ||||| |||||||| | ||||| ||||||||||    
T  41198074 atttgaacaaccatcttataggacaacttgtgggacaaccaaaaaatacaaagaaatgtatgtcttggcacataaatcaaaacaatagagagaaaaaatg 41197975  T
Q  474 a 474  Q
    |    
T  41197974 a 41197974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 19442699 - 19442585
Alignment:
Q  360 aaaacagcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctat 459  Q
    |||| |||||||||||||||| |||||||| ||   |||| ||   ||||||| |||||||||||||| || |||||||| ||||||||| |||||| ||    
T  19442699 aaaaaagcaatgttatttgaacaactattttatgtaacaacttattggacaactaaaatatacaaagatatataggtcttggcacaaaaaccaaagcaat 19442600  T
Q  460 agatagaaaaaatga 474  Q
    ||| ||| |||||||    
T  19442599 agagagagaaaatga 19442585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 43893411 - 43893349
Alignment:
Q  395 gacaatttgcgggacaaccaaaatatacaaagaaatgt-aggtctttgcacaaaaatcaaagc 456  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  43893411 gacaacttgtgggacaaccaaaatatacaaagaaatgtgaggtctaggcacaaaaatcaaagc 43893349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 454
Target Start/End: Original strand, 48788200 - 48788280
Alignment:
Q  373 tatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaa 454  Q
    |||||||  ||||||||  ||||| |||||| || ||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  48788200 tatttgaccaactattttttaagataatttgtgg-acaaccaaaatatccaaagaaatataggtatttgcacaaaaatcaaa 48788280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 45065795 - 45065905
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||  ||||  |||||||| ||| ||||||| ||||||||| ||||||||||   ||||  |||||||| |||||| ||||| ||| ||    
T  45065795 tgttatttgaacaatcattttgtaagacaacttgtgggacaatcaaaatatagaaagaaatgtgaatcttgacacaaaaaccaaagcaatagagagagaa 45065894  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  45065895 aatgagaatat 45065905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 45008055 - 45008120
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgta 433  Q
    ||||||||||||| ||| ||||  ||||| ||||||  |||||| |||||||||||||||||||||    
T  45008055 aatgttatttgaacaacaattttttaagataatttgttggacaatcaaaatatacaaagaaatgta 45008120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 461
Target Start/End: Complemental strand, 5507370 - 5507317
Alignment:
Q  408 acaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatag 461  Q
    |||| |||||||||||||||||||||||| || || |||||| |||||| ||||    
T  5507370 acaagcaaaatatacaaagaaatgtaggttttggctcaaaaaccaaagcaatag 5507317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 5617670 - 5617730
Alignment:
Q  372 ttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgta 433  Q
    ||||||||| |||||||| ||  ||||||||  | |||||||||||||||||||||||||||    
T  5617670 ttatttgaacaactatttaatg-gacaatttatgtgacaaccaaaatatacaaagaaatgta 5617730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 40439728 - 40439825
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||||| |||  ||| ||  |||||||||  ||||||||| | ||||||||||||| |||||  |  |||||| |||||||| |||||    
T  40439728 agcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtgtcacaaatatcaaagcaataga 40439825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 7918992 - 7919040
Alignment:
Q  407 gacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaag 455  Q
    |||||||||| ||||||||||||| |||||  | |||||||||||||||    
T  7918992 gacaaccaaattatacaaagaaatttaggtagtggcacaaaaatcaaag 7919040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 479
Target Start/End: Original strand, 54260097 - 54260206
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||||||||  ||  |||||||| ||||||||||||||||| ||||||||||  || || |||||||||||||||| ||||| ||| ||    
T  54260097 tgttatttgaacaactattttgtagaacaatttgtgggacaaccaaaatataaaaagaaatgtgagttttggcacaaaaatcaaagcaatagagagagaa 54260196  T
Q  470 aatgacaata 479  Q
    ||||| ||||    
T  54260197 aatgagaata 54260206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 4494125 - 4494222
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||||| ||| ||||| || ||||| |||  ||||||||||| ||||||||||||| |||||  |  ||||||||||||||| |||||    
T  4494125 agcaatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaataga 4494222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 14207178 - 14207255
Alignment:
Q  395 gacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatga 474  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||   |||||||||||||||| ||||| ||| |||||||    
T  14207178 gacaacttgtgggacaatcaaaatatacaaagaaatgtaggtc--cgcacaaaaatcaaagcaatagagagagaaaatga 14207255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 14214926 - 14215003
Alignment:
Q  395 gacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatga 474  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||   |||||||||||||||| ||||| ||| |||||||    
T  14214926 gacaacttgtgggacaatcaaaatatacaaagaaatgtaggtc--cgcacaaaaatcaaagcaatagagagagaaaatga 14215003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 469
Target Start/End: Original strand, 1340111 - 1340174
Alignment:
Q  406 ggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    |||||||||||||||| |||||||||||| ||||  ||||||||||||||| ||||| ||||||    
T  1340111 ggacaaccaaaatatataaagaaatgtagatcttgacacaaaaatcaaagcaatagagagaaaa 1340174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 436
Target Start/End: Original strand, 54870485 - 54870553
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggt 436  Q
    ||||||||||||| ||| ||||||| | | ||||||  ||||||||||||||||||||||||| |||||    
T  54870485 aatgttatttgaacaaccatttcatcatataatttgtaggacaaccaaaatatacaaagaaatataggt 54870553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 30567889 - 30567963
Alignment:
Q  406 ggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaatat 480  Q
    |||||||||||||||||||||||||||  ||||  ||||||||| |||||| || || ||| ||||||| |||||    
T  30567889 ggacaaccaaaatatacaaagaaatgtgagtctaggcacaaaaaccaaagcaatggagagagaaaatgaaaatat 30567963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 450
Target Start/End: Original strand, 36728052 - 36728134
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaat 450  Q
    |||||||||| |  ||| ||||||||  |||| ||||||| ||||||||||||| |||| ||| |||||||| ||||||||||    
T  36728052 aatgttatttaactaaccatttcatagaacaacttgcggggcaaccaaaatatataaaggaatttaggtcttggcacaaaaat 36728134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 31446002 - 31446088
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    ||||||||||||| ||| |||| || |||||| ||| ||||||||||||||||||  |   |||| |||||| ||||||||||||||||    
T  31446002 aatgttatttgaacaaccattttatgagacaacttgagggacaaccaaaatatac--atttatgtgggtcttagcacaaaaatcaaagc 31446088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 32631489 - 32631530
Alignment:
Q  408 acaaccaaaatatacaaagaaatgtaggtctttgcacaaaaa 449  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  32631489 acaaccaaaatatataaagaaatgtaggtcttggcacaaaaa 32631530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 37780491 - 37780411
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaa 448  Q
    ||||||||||||| | | |||| || | | || ||| ||||||| |||||||||||||||||||||||||||  |||||||    
T  37780491 aatgttatttgaatatccattttatgaaataacttgtgggacaatcaaaatatacaaagaaatgtaggtcttgccacaaaa 37780411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 41443120 - 41443168
Alignment:
Q  406 ggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaa 454  Q
    ||||||| ||| ||||||||||||| ||||| |||||||||||||||||    
T  41443120 ggacaactaaattatacaaagaaatttaggtatttgcacaaaaatcaaa 41443168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 33374669 - 33374588
Alignment:
Q  372 ttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaa 453  Q
    ||||||||| ||| |||| ||| ||||||||| |  |||||||||||||| |||| ||| ||| ||||  ||||||||||||    
T  33374669 ttatttgaacaaccattttatatgacaatttgtgaaacaaccaaaatatataaaggaatatagatcttgacacaaaaatcaa 33374588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 48347004 - 48346944
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaat 430  Q
    ||||||||||| ||||||||     ||||||||| ||||||||| ||||||||||||||||    
T  48347004 tgttatttgaacaactatttttgttgacaatttgtgggacaacctaaatatacaaagaaat 48346944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 28748290 - 28748180
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| |||||||||||||||||  |||||||||  ||||| |||||||||||||||| ||||| ||| ||    
T  28748290 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagtaagaaatgtgagtcttagcacaaaaatcaaagcaatagagagagaa 28748191  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  28748190 aatgagaatat 28748180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 10053051 - 10053130
Alignment:
Q  369 atgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaa 448  Q
    |||||||||||| |||||||| ||  || || ||| |||||||| ||||||||||||||||||||||| || ||||||||    
T  10053051 atgttatttgaacaactattttattggataacttgtgggacaactaaaatatacaaagaaatgtaggttttggcacaaaa 10053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 462
Target Start/End: Original strand, 18064980 - 18065075
Alignment:
Q  367 caatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||| |||| ||| ||  ||||| |||  ||||||||| | ||||||||||||| |||||  | ||||||| |||||||| |||||    
T  18064980 caatgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaataga 18065075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 1271466 - 1271404
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgt 432  Q
    ||||||||||| || ||||| ||  ||||||||| |||||||||| |||||||||| ||||||    
T  1271466 tgttatttgaacaattattttatgggacaatttgtgggacaaccataatatacaaaaaaatgt 1271404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 29459033 - 29459087
Alignment:
Q  408 acaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||| |||||  ||||||||||  ||||||||||||||| |||||    
T  29459033 acaaccaaaatatataaagatttgtaggtcttaacacaaaaatcaaagcaataga 29459087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 8505715 - 8505767
Alignment:
Q  418 tatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaa 470  Q
    ||||||||||||| |||||  ||| |||||||||||||| ||||| |||||||    
T  8505715 tatacaaagaaatttaggtagttgtacaaaaatcaaagcaatagagagaaaaa 8505767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 8920256 - 8920146
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| ||||||||||||||||| ||||||||||  ||||| ||||||||| |||||| ||||| ||| ||    
T  8920256 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaa 8920157  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  8920156 aatgagaatat 8920146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 41173430 - 41173320
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||  ||||  || || |||||| ||||||| ||||||||| ||||||||||  ||||| ||||||||| |||||| ||||| ||| ||    
T  41173430 tgttatttgaacaatcattttgtaggataatttgtgggacaatcaaaatataaaaagaaatgtgagtcttagcacaaaaaccaaagcaatagagagagaa 41173331  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  41173330 aatgagaatat 41173320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 29463148 - 29463071
Alignment:
Q  395 gacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaat 472  Q
    ||||| ||| ||||||||| |||||||||||||||| |  || || |||||||||||||||| ||||| ||| |||||    
T  29463148 gacaacttgtgggacaacctaaatatacaaagaaatatgagtattggcacaaaaatcaaagcaatagagagagaaaat 29463071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 31748478 - 31748418
Alignment:
Q  406 ggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagataga 466  Q
    |||||| |||| ||||||||||||| |||||  | |||||||||||||||| |||||||||    
T  31748478 ggacaatcaaattatacaaagaaatttaggttgtagcacaaaaatcaaagcaatagataga 31748418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 462
Target Start/End: Complemental strand, 39195934 - 39195830
Alignment:
Q  358 ctaaaacagcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagct 457  Q
    |||||| |||||||||||||||| || | ||| ||  |||||||||  ||||||||| | ||||||||||||| |||||  |   ||||||||||||||     
T  39195934 ctaaaaaagcaatgttatttgaacaatttttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtgatacaaaaatcaaagca 39195835  T
Q  458 ataga 462  Q
    |||||    
T  39195834 ataga 39195830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 468
Target Start/End: Original strand, 3109400 - 3109463
Alignment:
Q  405 gggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaa 468  Q
    ||||||||||||||||| |||||||||||||| ||  | ||||||||||| | ||||| |||||    
T  3109400 gggacaaccaaaatatataaagaaatgtaggtattgacgcaaaaatcaaaaccatagagagaaa 3109463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 449
Target Start/End: Original strand, 15884644 - 15884723
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaa 449  Q
    ||||||||||| ||| ||||  ||||| || ||| ||||||||||||||||| ||||||||||  |||||  ||||||||    
T  15884644 tgttatttgaacaaccattttgtaagataacttgtgggacaaccaaaatatagaaagaaatgtgagtcttgacacaaaaa 15884723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 42446221 - 42446284
Alignment:
Q  407 gacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaa 470  Q
    ||||||||||  |||||||||||| |||||  | |||||||||||||||| ||||| |||||||    
T  42446221 gacaaccaaataatacaaagaaatttaggtaatggcacaaaaatcaaagcaatagagagaaaaa 42446284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 12739951 - 12739858
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    ||||||||||||| || |||||  || || ||||||  ||||||||||| ||||||||||||| |||||    |||||||||||||||| |||||    
T  12739951 aatgttatttgaacaa-tattttttatgataatttgttggacaaccaaattatacaaagaaatttaggtagaagcacaaaaatcaaagcaataga 12739858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 12802774 - 12802681
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    ||||||||||||| || |||||  || || ||||||  ||||||||||| ||||||||||||| |||||    |||||||||||||||| |||||    
T  12802774 aatgttatttgaacaa-tattttttatgataatttgttggacaaccaaattatacaaagaaatttaggtagaagcacaaaaatcaaagcaataga 12802681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 21922038 - 21922140
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||||||| |||||||| |||||| | |||| ||||   ||||| ||||||||| |||||| ||||| ||| ||    
T  21922038 tgttatttgaacaaccattttctaggacaatttgtgggacaacaaaaatagagaaaggaatgcgagtcttggcacaaaaaccaaagcaatagagagagaa 21922137  T
Q  470 aat 472  Q
    |||    
T  21922138 aat 21922140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 38363535 - 38363441
Alignment:
Q  372 ttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatac----aaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    ||||||||| ||| |||| ||  ||||| ||| ||||||||||||||||||    ||| ||||||||||| | ||||||||| |||||| |||||    
T  38363535 ttatttgaacaaccattttatgtgacaacttgtgggacaaccaaaatatacaaaaaaaaaaatgtaggtcatggcacaaaaaccaaagcaataga 38363441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 6647001 - 6646891
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  || ||||| ||| ||||||||||||||||| ||||||||||  ||||| ||||||||| |||||| ||||| ||| ||    
T  6647001 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaa 6646902  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  6646901 aatgagaatat 6646891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 6511448 - 6511560
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaa 467  Q
    ||||||||||||| ||| ||||  || ||||| ||| ||||||||||||||||| ||||||||||  |||||  |||||||| |||||| ||||| |||     
T  6511448 aatgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagaaagaaatgtgagtcttgacacaaaaaccaaagcaatagagagag 6511547  T
Q  468 aaaatgacaatat 480  Q
    ||||||| |||||    
T  6511548 aaaatgagaatat 6511560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 455
Target Start/End: Complemental strand, 33414623 - 33414536
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaag 455  Q
    ||||||||||||| |||||||| ||  || || ||| |||| || |||||||||||||||||||||||||||  ||||||||||||||    
T  33414623 aatgttatttgaacaactattttatttgataacttgtgggataatcaaaatatacaaagaaatgtaggtcttaacacaaaaatcaaag 33414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 2971708 - 2971818
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    ||||||||||| ||| ||||  |||||||| ||| ||||||||||||||||| ||| ||||||  ||||| | ||||||| |||||| ||||| ||| ||    
T  2971708 tgttatttgaacaaccattttgtaagacaacttgtgggacaaccaaaatatagaaaaaaatgtgagtcttggtacaaaaaccaaagcaatagagagagaa 2971807  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  2971808 aatgagaatat 2971818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 452
Target Start/End: Complemental strand, 33412969 - 33412885
Alignment:
Q  368 aatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatca 452  Q
    ||||||||||||| |||||||| ||  ||||||||  || |||| |||||||||||||||||||||||||||  |||||| ||||    
T  33412969 aatgttatttgaacaactattttatttgacaatttatggaacaatcaaaatatacaaagaaatgtaggtcttaacacaaatatca 33412885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 462
Target Start/End: Original strand, 32972798 - 32972890
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    ||||||||||| ||| ||||  || ||||| ||| |||||||||||||||||  |||||||||  ||||| ||||||||| |||||| |||||    
T  32972798 tgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagtaagaaatgtgagtcttggcacaaaaaccaaagcaataga 32972890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 44821888 - 44821963
Alignment:
Q  405 gggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaatat 480  Q
    |||||||||||||||| |||||||||||  |||| |||||||||| |||||| || || ||| ||||||| |||||    
T  44821888 gggacaaccaaaatatccaaagaaatgtgagtctatgcacaaaaaccaaagcaatggagagagaaaatgaaaatat 44821963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 33045721 - 33045611
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaa 469  Q
    |||||||| || ||| ||||  || ||||||||| ||||||||||||||||| ||||||||||  ||||| | ||| ||| |||||| ||||| | | ||    
T  33045721 tgttatttaaacaaccattttgtatgacaatttgtgggacaaccaaaatatagaaagaaatgtgagtcttggtacagaaaccaaagcaatagagaaagaa 33045622  T
Q  470 aatgacaatat 480  Q
    ||||| |||||    
T  33045621 aatgagaatat 33045611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 456
Target Start/End: Complemental strand, 30978065 - 30977980
Alignment:
Q  370 tgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagc 456  Q
    ||||||||||| ||| |||| ||  ||||| ||| ||||||| ||||||||| ||||||||||  ||||  ||||||||||||||||    
T  30978065 tgttatttgaacaaccattttatgggacaacttgtgggacaatcaaaatata-aaagaaatgtgagtctaggcacaaaaatcaaagc 30977980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 40504369 - 40504303
Alignment:
Q  405 gggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaa 471  Q
    ||||||||||||||||| ||||||||||  || ||  ||||||||||||||| ||| | ||||||||    
T  40504369 gggacaaccaaaatatataaagaaatgttagtattgacacaaaaatcaaagcaataaaaagaaaaaa 40504303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 480
Target Start/End: Complemental strand, 9194570 - 9194497
Alignment:
Q  408 acaaccaaaatatacaaagaaatgt-aggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaatat 480  Q
    ||||||||||||||||||||| ||| ||||||  ||||||||| |||||| || || ||| ||||||| |||||    
T  9194570 acaaccaaaatatacaaagaattgtgaggtctaggcacaaaaaccaaagcaatggagagagaaaatgaaaatat 9194497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 44018383 - 44018326
Alignment:
Q  405 gggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    ||||||||||||||||||| ||||||||| || ||  |||||||| |||||| |||||    
T  44018383 gggacaaccaaaatatacatagaaatgtatgttttgacacaaaaaccaaagcaataga 44018326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 462
Target Start/End: Complemental strand, 14871772 - 14871724
Alignment:
Q  414 aaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||| ||||||||||| |||||  ||||||||||||||| |||||    
T  14871772 aaaatatagaaagaaatgtatgtcttgacacaaaaatcaaagcaataga 14871724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 480
Target Start/End: Complemental strand, 22755 - 22646
Alignment:
Q  371 gttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaa 470  Q
    |||||||||| ||| |||| ||  ||||| ||| ||||||||||||||||||||||||||||  ||||  |||||||||||||||| || || ||| |||    
T  22755 gttatttgaacaaccattttatgggacaacttgtgggacaaccaaaatatacaaagaaatgtgagtctaggcacaaaaatcaaagcaatggagagagaaa 22656  T
Q  471 atgacaatat 480  Q
    |||| |||||    
T  22655 atgaaaatat 22646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 3770 - 3851
Alignment:
Q  398 aatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaata 479  Q
    |||||| ||||||| |||||||  ||||||||||||||||||  |||| ||| |||||||||||||||| ||||||| ||||    
T  3770 aatttgggggacaatcaaaatacgcaaagaaatgtaggtcttgacacataaaccaaagctatagatagagaaaatgagaata 3851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 406 - 480
Target Start/End: Complemental strand, 44916 - 44842
Alignment:
Q  406 ggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctatagatagaaaaaatgacaatat 480  Q
    |||||||||||||||| ||||||||||  ||||| | |||||||||||||| ||||| ||| ||||||| |||||    
T  44916 ggacaaccaaaatatagaaagaaatgtgagtcttagtacaaaaatcaaagcaatagagagagaaaatgagaatat 44842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 430
Target Start/End: Complemental strand, 8992 - 8957
Alignment:
Q  395 gacaatttgcgggacaaccaaaatatacaaagaaat 430  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8992 gacaacttgcgggacaaccaaaatatacaaagaaat 8957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 8841 - 8938
Alignment:
Q  365 agcaatgttatttgaaaaactatttcataagacaatttgcgggacaaccaaaatatacaaagaaatgtaggtctttgcacaaaaatcaaagctataga 462  Q
    |||||||||||||||| |||  ||||||  ||||| ||   ||||||||| | ||||||||||||| |||||  |  ||||||||||||||| |||||    
T  8841 agcaatgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagcaataga 8938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University