View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15993_high_3 (Length: 367)
Name: NF15993_high_3
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15993_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 29354495 - 29354828
Alignment:
| Q |
14 |
gtgagatgaaggaagaaagagttttgattgaggcaattcaacttggtgcttttcagaaacttttggttatgttgcaagttgggtgtgaggagaaaacaaa |
113 |
Q |
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| T |
29354495 |
gtgagaagaaggaagaaagagttttgattgaggcaattcaacttggtgcttttcagaaacttttggttatgttgcaagttgggtgtgaggagaaaacaaa |
29354594 |
T |
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| Q |
114 |
ggagaatactactgagttgttgaaattgttgaatggttatagaagcaaagctgaatgtgttgataattcattagatttcaagtatctcaagaactaagaa |
213 |
Q |
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| T |
29354595 |
ggagaatactactgagttgttgaaattgttgaatggttatagaagcaaagctgaatgtgttgataattcattagatttcaagtatctcaagaactaagaa |
29354694 |
T |
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| Q |
214 |
gcctttctaaatactgattcaagannnnnnnnnngatgaatactcatgagaatgagattcattcatttc----nnnnnnngtatagggtagattcattta |
309 |
Q |
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| T |
29354695 |
gcctttctaaatactgattcaagagatttttttt-atgaatactcatgagaatgagattcattcatttctttttttttttgtatagggtagattcattta |
29354793 |
T |
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| Q |
310 |
tagagactcaattctttgatgtataaagatacaca |
344 |
Q |
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| T |
29354794 |
tagagactcaattctttgatgtataaagatacaca |
29354828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 33090057 - 33090199
Alignment:
| Q |
35 |
ttttgattgaggcaattcaacttggtgcttttcagaaacttttggttatgttgcaagttgggtgtgaggagaaaacaaaggagaatactactgagttgtt |
134 |
Q |
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| T |
33090057 |
ttttgattgaggcaattcaacttgggatgtttcagaaactacttgttttgttgcaagtaggttgtgctgagagtaccaaggagaaagctactgaattgtt |
33090156 |
T |
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| Q |
135 |
gaaattgttgaatggttatagaagcaaagctgaatgtgttgat |
177 |
Q |
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| T |
33090157 |
gaaattgttgaacggttataaaagcaaagcagagtgtgttgat |
33090199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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