View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15993_high_7 (Length: 265)
Name: NF15993_high_7
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15993_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 47693682 - 47693924
Alignment:
| Q |
18 |
aggacgaaccgttgaacaacaagttcttgaagtatgatttcnnnnnnnatcttcccctacagcgcaaaattcaatttctctcttcttgaactgccactca |
117 |
Q |
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| T |
47693682 |
aggacgaaccgttgaacaacaagttcttgaagtatgatttctttttttatcttcccctacagcgcaaaattcaatttttctcttcttgaactgccactca |
47693781 |
T |
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| Q |
118 |
tttgaaacttttgtattaacttatttgagtacagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccaggcaagtc |
217 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47693782 |
tttgagacttttgtattaacttatttgagtgcagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccaggcaagtc |
47693881 |
T |
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| Q |
218 |
ttccttacatgtgagcagtaaatattcttgtgttcatctctct |
260 |
Q |
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| T |
47693882 |
ttccttacatgtgagcagtaaatattcttgtgtttatttctct |
47693924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 35832030 - 35831968
Alignment:
| Q |
149 |
cagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccagg |
211 |
Q |
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| T |
35832030 |
cagtcaaatccagttctggaagcatttggcaatgccaaaactgtcaggaataacaattccagg |
35831968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 13858531 - 13858473
Alignment:
| Q |
149 |
cagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattc |
207 |
Q |
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| T |
13858531 |
cagtccaatcctgttttagaagcatttggaaatgcaaaaactgttaggaataataattc |
13858473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 31189811 - 31189749
Alignment:
| Q |
149 |
cagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccagg |
211 |
Q |
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|||||||| |||||| | ||||||||||||||||| ||||| || || ||| ||||||||||| |
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| T |
31189811 |
cagtcaaacccagttcttgaagcatttggtaatgcaaaaacagttagaaatgacaattccagg |
31189749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 35832174 - 35832136
Alignment:
| Q |
18 |
aggacgaaccgttgaacaacaagttcttgaagtatgatt |
56 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |
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| T |
35832174 |
aggaagaacagttgaacaacaagttcttgaagtatgatt |
35832136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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