View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15993_low_1 (Length: 587)
Name: NF15993_low_1
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15993_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Original strand, 3076728 - 3077294
Alignment:
| Q |
18 |
aagaaaatgtactatttgttatgccaagggaagaacctttcttttt-caannnnnnnnnnn-aacaaattagacaaagtgaactatgctatgattattga |
115 |
Q |
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| T |
3076728 |
aagaaaatgtactatttgttatgccaagggaaggaccttttttttttcaattttttttttttaacaaattagacaaagtgaactatgctatgattattgg |
3076827 |
T |
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| Q |
116 |
taagaaattaaggtcctggctatgctttgtagtgtcgtcaagtagcggctatagcagaaacagaattttaacatatcgttatggttttatgacacacatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076828 |
taagaaattaaggtcctggctatgctttgtagtgtcatcaagtagcggctatagcagaaacagaattttaacatatcgttatggttttatgacacacatt |
3076927 |
T |
|
| Q |
216 |
ttagttcaaagtatcctcaaatatcggatataggaaagcatagcataatttgaacaaactactatattgcaatctgtgattgacaacaatgttattcttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3076928 |
ttagttcaaagtatcctcaaatatcggatataggaaagcatagcataatttgaacaaactactacattgcaatctgtgattgacaacaatgttattcttt |
3077027 |
T |
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| Q |
316 |
catcaaactgcatagattaggttttttaaatatttttgaaaattatttcactttgtgtcctctatatgctgccatcttatttggcttggtgttgtattgg |
415 |
Q |
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| T |
3077028 |
catcaaactgcatagattaggttttttaaatatttttgaaaattatttcactttgtgtcctctatatgctgccatcttatttggcttggtgttgtattgg |
3077127 |
T |
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| Q |
416 |
tttttaaagttttctctttgtgtgtgtatgtattcatttctattcatatgtattcaagtactgtgtatatctgcattcatattcaatttagggtttcaag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3077128 |
tttttaaagttttctctttgtgtgtgtatgtattcatttctattcatatgtattcaagtactgtgtatatctgcattcatattcaatttagggtttcaag |
3077227 |
T |
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| Q |
516 |
atttaaaaatttaagctattgttttgttctactgaaatataggagcttattgttattgatgatgtcc |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3077228 |
atttaaaaatttaagctattgttttgttctactgaaatataggagcttattgttattgatgaagtcc |
3077294 |
T |
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