View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15993_low_15 (Length: 229)
Name: NF15993_low_15
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15993_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 26126480 - 26126282
Alignment:
| Q |
18 |
aaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaacc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26126480 |
aaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaacc |
26126381 |
T |
|
| Q |
118 |
aagatgctctcaaacctttctccgatggcacacctcgataaccttgtttctgtgtcttagttgttcttcaaaaacttaacgagcacccatacctatgct |
216 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| |
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| T |
26126380 |
aagatgctctcaaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatacttaacgagcacctatacttatgct |
26126282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 26084258 - 26084077
Alignment:
| Q |
21 |
ctcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaag |
120 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26084258 |
ctcagtaaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaag |
26084159 |
T |
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| Q |
121 |
atgctctcaaacctttctccgatggcacacctcgataaccttgtttctgtgtcttagttgttcttcaaaaacttaacgagca |
202 |
Q |
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| T |
26084158 |
atgctctcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaacttaaccagca |
26084077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 26096533 - 26096360
Alignment:
| Q |
21 |
ctcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaag |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
26096533 |
ctcagtaaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaag |
26096434 |
T |
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| Q |
121 |
atgctctcaaacctttctccgatggcacacctcgataaccttgtttctgtgtcttagttgttcttcaaaaactt |
194 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |
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| T |
26096433 |
atgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
26096360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 26119820 - 26119628
Alignment:
| Q |
21 |
ctcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaag |
120 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
26119820 |
ctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttgaatattatgttaatgggaaccaag |
26119721 |
T |
|
| Q |
121 |
atgctctcaaacctttctccgatggcacacctcgataaccttgtttctgtgtcttagttgttcttcaaaaacttaacgagcacccatacctatgct |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | ||||| || |||| ||||||||||||||||||||| |||| |||||| |
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| T |
26119720 |
atgctctcaaaccttttcccgatggcacacctcgataaccttgt---tatgtctaagctgttgttcaaaaacttaacgagcacctatacttatgct |
26119628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 26075664 - 26075488
Alignment:
| Q |
21 |
ctcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaag |
120 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||| |
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| T |
26075664 |
ctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaatattatgttaatgggaactaag |
26075565 |
T |
|
| Q |
121 |
atgctctcaaacctttctccgatggcacacctcgataaccttgtttctgtgtcttagttgttcttcaaaaacttaac |
197 |
Q |
| |
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||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||| |
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| T |
26075564 |
atgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaacataac |
26075488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 26064536 - 26064377
Alignment:
| Q |
18 |
aaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaacc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
26064536 |
aaactcagtaaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaacc |
26064437 |
T |
|
| Q |
118 |
aagatgctctcaaacctttctccgatggcacacctcgataaccttgtttctgtgtcttag |
177 |
Q |
| |
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|||||||||||||||||||| | |||||| || | |||||||||||||||||||||| |
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| T |
26064436 |
aagatgctctcaaacctttccctgatggctcaaagtggtaaccttgtttctgtgtcttag |
26064377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 26035885 - 26035723
Alignment:
| Q |
21 |
ctcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaag |
120 |
Q |
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||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||| |
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| T |
26035885 |
ctcagtaaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcgaatattatgtcaatgggaaacaag |
26035786 |
T |
|
| Q |
121 |
atgctctcaaacctttctccgatggcacacctcgataaccttgtttctgtgtcttagttgttc |
183 |
Q |
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||||||||||||||||||| |||||| || | | ||||||| |||| ||||||||||||||| |
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| T |
26035785 |
atgctctcaaacctttctctgatggctcagattggtaaccttatttccgtgtcttagttgttc |
26035723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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