View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15993_low_6 (Length: 366)
Name: NF15993_low_6
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15993_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 4008084 - 4007737
Alignment:
| Q |
1 |
tgtgtgaatgaaggacaaagaaagttaataaacaacggttctaatctttcttcctttcttagaagacatgttccttcctgaattgggataattgttacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4008084 |
tgtgtgaatgaaggacaaagaaagttaataaacaacggttctaatctttcttcctttcttagaagacatgttccttcctgaattgggataattgttacta |
4007985 |
T |
|
| Q |
101 |
ctaatttctatattttatcaatattcttcccctaaatattgaatcgcttcttctcttatacccctaatatgtacatcttttacatcaaccacaatggtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4007984 |
ctaatttctatattttatcaatattcttcccctaaatattgaatctcttcttctcttatacccctaatatgtaaatcttttacatcaaccacaatggtag |
4007885 |
T |
|
| Q |
201 |
tttattcacaagaggtaaaccaagaaagacaataagaagtttc---ttgggaagccccgctgccaatgaggttcagagcatgaatcattattcttttgaa |
297 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4007884 |
tttattcacaaaaggtaaaccaagaaagacaataagaagtttcttgttgggaagccccgctgccaatgaggttcagagcatgaatcattattcttttgaa |
4007785 |
T |
|
| Q |
298 |
agcaaatgtgggagaagagttgtgattagaaattcaaatacctctcgg |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4007784 |
agcaaatgtgggagaagagttgtgattagaaattcaaatacctctcgg |
4007737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 6212910 - 6212819
Alignment:
| Q |
25 |
ttaataaacaacggttctaatctttcttcctttcttagaagacatgttccttcctgaattgggata--attgttactactaatttctatatt |
114 |
Q |
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| T |
6212910 |
ttaataaacaaaagttctagtcttcctccctttcttaggagagatgtcccttctcgaattgggataatattgttactgttaatttttatatt |
6212819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 33738606 - 33738513
Alignment:
| Q |
22 |
aagttaataaacaacggttctaatctttcttcctttc-ttagaagacatgttccttcctgaattgggataattgttactactaatttctatatt |
114 |
Q |
| |
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|||||||||||||| |||||| |||| || |||||| ||| ||| |||| ||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
33738606 |
aagttaataaacaaaagttctagtcttcctccctttccttaagagagatgtcccttcttgaattgggataattgttactgttaatttctatatt |
33738513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 31466634 - 31466536
Alignment:
| Q |
25 |
ttaataaacaacggttctaatctttcttcctttcttagaagacatgttccttcctgaattgggataattgttactactaatttctatattttatcaata |
123 |
Q |
| |
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|||||||| || |||||| |||| || |||||||||| ||| |||| ||||| |||||||||||||||| || ||||||||||||| |||||||| |
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| T |
31466634 |
ttaataaataaaagttctagtcttcctccctttcttaggagagatgtcccttctcgaattgggataattgtatctgttaatttctatattctatcaata |
31466536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 521617 - 521546
Alignment:
| Q |
26 |
taataaacaacggttctaatctttcttcctttcttagaagacatgttccttcctgaattgggataattgtta |
97 |
Q |
| |
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|||||||||| |||||| |||| || ||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
521617 |
taataaacaaaagttctactcttcctctctttcttaggagacatgttccttctcgaattgggataattgtta |
521546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 33842986 - 33843086
Alignment:
| Q |
22 |
aagttaataaacaacggttctaatctttcttcctttcttagaagacatgttccttcctgaattgggataattgttactactaatttctatattttatcaa |
121 |
Q |
| |
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|||||||||||||| ||||||||||| || | |||||||||||||| || | ||| ||||||| |||||||| | | |||||||||| ||| ||||| |
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| T |
33842986 |
aagttaataaacaaaagttctaatcttactccatttcttagaagacacgtcctttctcgaattggcctaattgttgccattaatttctatgtttcatcaa |
33843085 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
33843086 |
t |
33843086 |
T |
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