View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15993_low_8 (Length: 301)
Name: NF15993_low_8
Description: NF15993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15993_low_8 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 8350208 - 8350505
Alignment:
| Q |
17 |
aggacatatattgaatatgacaacaaaaacagtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8350208 |
aggacatatattgaatatgacaacaaaaacagtgattaattcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaatg |
8350307 |
T |
|
| Q |
117 |
agttcaagagtcctagttgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaattactc-------- |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8350308 |
agttcaagagccctagttgtccatggtttggcagatggagctttattcatcgactccaatcgatgtccagctggagctggaaagaataactcaattcatc |
8350407 |
T |
|
| Q |
209 |
-----atcgtgttctaaaatttgaaggtcatattcaattgctgtgatttctagtatttttccaatgttagattatagattctaggatgacaaaggaag |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8350408 |
cacttatcgtgttctaaaatttgaaggtcatattcaattgctgtgatttctagtatttttccaatgttagattatagattctaggatgacaaaggaag |
8350505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 8480905 - 8480608
Alignment:
| Q |
17 |
aggacatatattgaatatgacaacaaaaacagtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
8480905 |
aggacatatattgaatatgacaacaaaaacagtgattaattcagccttcatgaaaattaaatctaaacaggttcagagtagatttattatgccataaatg |
8480806 |
T |
|
| Q |
117 |
agttcaagagtcctagttgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaattactc-------- |
208 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
8480805 |
agttcaagagccctagttgtcaatggtgtggcagatggagcttcattaagagactccaatctatgtctagctggagctggaaagaataactcaatttatc |
8480706 |
T |
|
| Q |
209 |
-----atcgtgttctaaaatttgaaggtcatattcaattgctgtgatttctagtatttttccaatgttagattatagattctaggatgacaaaggaag |
301 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
8480705 |
gatttatcgtgttctaaaatttgaaggtcaaattcaattgctctgatttcgagtatttttccaatgttggattgttgattctaggatgacaaaggaag |
8480608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 8361634 - 8361716
Alignment:
| Q |
33 |
atgacaacaaaaacagtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaat |
115 |
Q |
| |
|
||||||| |||| |||||||| ||| |||| | ||||||||| |||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
8361634 |
atgacaataaaatcagtgattgttttagccataatgaaaattgaatcaaaataggttcagagcagatatattatgccaaaaat |
8361716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 8355264 - 8355333
Alignment:
| Q |
134 |
tgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaat |
203 |
Q |
| |
|
|||||||||| |||||||||||| | |||||| || |||||||||||||| | ||||||||||||||||| |
|
|
| T |
8355264 |
tgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaat |
8355333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 8415057 - 8415116
Alignment:
| Q |
47 |
agtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattat |
106 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
8415057 |
agtgattgtttcagccatcatgaaaatcgaatctaaataggttcagagcagatatattat |
8415116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 8483073 - 8482997
Alignment:
| Q |
134 |
tgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaattactcat |
210 |
Q |
| |
|
|||||||||| ||||||| ||| | |||||| ||||||||||||||||| | | ||||||||||||||| |||||| |
|
|
| T |
8483073 |
tgtccatggtgtggcagagagagatgcattcaccgactccaatcgatgtctacccggagctggaaagaataactcat |
8482997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University