View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15994_high_3 (Length: 395)
Name: NF15994_high_3
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15994_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 25 - 343
Target Start/End: Complemental strand, 12064274 - 12063954
Alignment:
| Q |
25 |
gggcgaaccataaagataaagtaattttatatttaagtcaaagatattttagcaatttcccttataannnnnnnn--cttttgggtgggccgtggcccat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12064274 |
gggcgaaccataaagataaagtaattttatattaaagtcaaagatattttagcaatttcccttataatattttttttcttttgggtgggccgtggcccat |
12064175 |
T |
|
| Q |
123 |
caataatgtagctctgccattgatcaagactcatttaataaatttttagaatgagcaatgttaaatgtctcacattaaatgatatcttaaagtgttataa |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
12064174 |
caataatgtggctctgccattgatcaagactcatttaataaatttttagaatgagcaatgttaaaagtctcacattgaatgatatcttaaagtgttataa |
12064075 |
T |
|
| Q |
223 |
gttagaataagaagatgatcatgacgattttgtaagagttaagttagaccaactcaaattttaagaagcatgttagatgaatacaaacatcctacctatt |
322 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12064074 |
gttagaataaggagatgatcatgacgattttgtaagagttaagttagaccaactcaaattctaagaagcatgttagattaatacaaacatcctacctatt |
12063975 |
T |
|
| Q |
323 |
atatatcattgatattcattt |
343 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12063974 |
atatatcattgatattcattt |
12063954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 12063931 - 12063896
Alignment:
| Q |
345 |
tgaaaaacttgtattgtttgttttattattatactg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12063931 |
tgaaaaacttgtattgtttgttttattattatactg |
12063896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University