View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15994_high_4 (Length: 323)
Name: NF15994_high_4
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15994_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 33161997 - 33162309
Alignment:
| Q |
1 |
ctgaagacagcgccggcgacagtaacctcccaccagaattctttgcttctacgtcaccacaaaaactcccactcggtttcaaccgaaacttcaactctga |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33161997 |
ctgaagacagcgccggcgacggttacctcccaccggaattctttgcttctacgtcaccacaaaaactcccactcggtttcaaccgaaacttcaactctga |
33162096 |
T |
|
| Q |
101 |
caccgtccaccctcccgccggcagtgcatgtaccctatttcccgacgatatccgcagtttcatgtcctacgacgttaatggatcatgtccagacgacgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33162097 |
caccgtccaccctcccgccggcagtgcatgtaccctatttcccgacgatatccgcagcttcatgtcctacgacgttaatggatcatgtccagacgacgag |
33162196 |
T |
|
| Q |
201 |
attctctctcaaagactcctcctaaaaggctgcgagcctctccctcgccgccgttgccgtccggcggcaccaccaaatttcccactgcctatccccttcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33162197 |
attctctctcaaagactcctcctaaaaggctgcgagcctctccctcgccgccgttgccgtccggcggcaccaccaaatttcccacagcctatccccttcc |
33162296 |
T |
|
| Q |
301 |
cttctagtctctg |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33162297 |
cttctagtctctg |
33162309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University