View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15994_low_1 (Length: 798)
Name: NF15994_low_1
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15994_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 14 - 788
Target Start/End: Original strand, 39493753 - 39494520
Alignment:
| Q |
14 |
atcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaatgacgggacttaattgattacctgtgcatgatgta |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39493753 |
atcatcaaacaactcaagctcatcagtttgctcagatgagagcaacatcaaacttctttcatcaatgacgggacttaattgattacctgtgtatgatgta |
39493852 |
T |
|
| Q |
114 |
actgcatgattagctgcgcatattttaggctttctcaatattttattgaagaatcggtaaatcaagttgactatataaacttcataaaatatcatataaa |
213 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39493853 |
actgcatgattagctgcgcatattttag-ctttctcaatattttattgaagaatcggtaaatcaagttgactatataaacttcataaaatatcatataaa |
39493951 |
T |
|
| Q |
214 |
ataaaaagtgcaaaacctcttcctcatagtctgtaaggatattgaaatttgaaccagtactgaaactcataagcttaacaatatttgcaatatacttaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39493952 |
ataaaaagtgcaaaacctcttcctcatattctgtaaggatattgaaatttgaaccagtactgaaactcataagcttaacaatatttgcaatatacttaaa |
39494051 |
T |
|
| Q |
314 |
attaaaattgcgtcagtgcaatgatcgtcactttacattgacataatattataaataaaccactaaaacgaggaaaatatcgtgtttaaaagcttccaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494052 |
attaaaattgcgtcagtgcaatgatcgtcactttacattgacataatattataaataaaccactaaaacgaggaaaatatcgtgtttaaaagcttccaaa |
39494151 |
T |
|
| Q |
414 |
tatgtgcaagaatgcacnnnnnnnnnnnnnnnnnnnnccaaattagtaacaacaatgtgagatatgaaaactagtgaagattttcaacttgactaagaca |
513 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494152 |
tatgtgcaagaatgaa-----aaaaaaaaaaaaaaaaccaaattagtaacaacaatgtgagatatgaaaactagtgaagattttcaacttgactaagaca |
39494246 |
T |
|
| Q |
514 |
ttcaacgttaaaatgattaaagatgtttttaaaaagttagatagatcaggtaattaaaaagatcaacaataataaaagaaatggttgcaatgaaaaagaa |
613 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39494247 |
ttcaacgttaaaatgattaaagatg-ttttaaaaagttagatagatcaggtaattaaaaagatcaacaataataaaagaaacggttgcaatgaaaaagaa |
39494345 |
T |
|
| Q |
614 |
catttacccaattctggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaac |
713 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39494346 |
catttacccaattctggttctattaaagcatcatattttttctctcttaactcaggccgcttcagttttccatcaaatttacatggcattgactcaaaac |
39494445 |
T |
|
| Q |
714 |
ccttcatgcgtccgtcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttcttgtcctttg |
788 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
39494446 |
ccttcatgcgtccgtcaaactgcttctcttttggcttcagctccttcacgtgtgctttgaacttcttgtcttttg |
39494520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 39144464 - 39144245
Alignment:
| Q |
14 |
atcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaatgacgggacttaattgattacctgtgcatgatgta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |
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| T |
39144464 |
atcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaatgtcgggacttaattgattacctatgtatgatgta |
39144365 |
T |
|
| Q |
114 |
actgcatgattagctgcgcatattttaggctttctcaatattttattgaagaatcggtaaatcaagttgactatataaacttcataaaatatcatataaa |
213 |
Q |
| |
|
||||||| ||||| ||| ||||||||| |||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||| ||||||| |
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| T |
39144364 |
actgcataattagttgcacatatttta-gctttctcaatatttttttgaagaatcggtaaaccaaggtgacaatataaacttcataaaatattatataaa |
39144266 |
T |
|
| Q |
214 |
at-aaaaagtgcaaaacctct |
233 |
Q |
| |
|
|| ||| |||| ||||||||| |
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|
| T |
39144265 |
atgaaagagtgaaaaacctct |
39144245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 39425855 - 39426144
Alignment:
| Q |
22 |
acaactcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaatgacgggacttaattgattacctgtgcatgatgtaactgcatg |
121 |
Q |
| |
|
|||||||||| || || ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||| |
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| T |
39425855 |
acaactcaagttcctctgtttgctcacatgggagcaacatcaaacttctttcatcaatggcgggacttaattgattacatgtgtacgatgtaactgcata |
39425954 |
T |
|
| Q |
122 |
attagct-gcgcatattttaggctttctcaatattttattgaagaatcggtaaatcaagttgactatataaacttcataaaatatcatataaaat-aaaa |
219 |
Q |
| |
|
||||||| || |||| |||| |||| |||| ||||| |||||| || ||||||||||| |||| ||||| |||| ||| ||| | |||||| || ||| |
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|
| T |
39425955 |
attagctagcacata-tttaagcttcctcagtatttatttgaaggattggtaaatcaaggtgacaatatatactttatataatgttatataacatgaaat |
39426053 |
T |
|
| Q |
220 |
agtgcaaaacctcttcctcatagtctgtaaggatattgaaatttgaaccagtactgaaactcataagcttaacaatatttgcaatatactt |
310 |
Q |
| |
|
|||| ||||||||| || |||||| |||||| ||| | ||||||||||| |||||| ||||||||||||||| ||||||||||| |||| |
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| T |
39426054 |
agtgaaaaacctctcccacatagtttgtaagtatagtaaaatttgaacctgtactgtaactcataagcttaatgctatttgcaataaactt |
39426144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 628 - 783
Target Start/End: Original strand, 39426481 - 39426636
Alignment:
| Q |
628 |
tggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccg |
727 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||| || |||| ||||||||| ||||| ||||||||| |
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|
| T |
39426481 |
tggttctattaaagcatcatattgtttctctcttaactcaggccgctccagctgtccatcaaattcacttggctttgactcaagaccctccatgcgtccc |
39426580 |
T |
|
| Q |
728 |
tcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttcttgtc |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
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|
| T |
39426581 |
tcaaactgcttctcttttggcttgagctccttctcgtgtactttgaagttcttgtc |
39426636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 628 - 783
Target Start/End: Complemental strand, 39130780 - 39130625
Alignment:
| Q |
628 |
tggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccg |
727 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||| || ||||||||| |||||||| |||| ||||||||| || |||||||| ||| |
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|
| T |
39130780 |
tggttctattaaagaatcatattgtttctctcttaagtcaggccgcttcggttttccatgaaatttacttggctttgactcaagactcttcatgcatccc |
39130681 |
T |
|
| Q |
728 |
tcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttcttgtc |
783 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||| ||||||| |||||||| |
|
|
| T |
39130680 |
tcaaactgcttctcttttggcttaagatccttcaaatgtactttgaatttcttgtc |
39130625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 39189079 - 39189252
Alignment:
| Q |
25 |
actcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaatgacgggacttaattgattacctgtgcatgatgtaactgcatgatt |
124 |
Q |
| |
|
||||||| || |||||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||||| ||| |
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| T |
39189079 |
actcaagttcgtcagtttgatcacatgggagcaacatcaaacttctttcatcaacggtgggacttaattgattacctgtgtacgatgtaactgcataatt |
39189178 |
T |
|
| Q |
125 |
agct-gcgcatattttaggctttctcaatattttattgaagaatcggtaaatcaagttgactatataaacttcata |
199 |
Q |
| |
|
|||| || ||| |||| |||| |||| || |||||||||| || |||||||||| |||| |||||||||||||| |
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|
| T |
39189179 |
agctagcagata-tttaagcttcctcagta-tttattgaaggttcagtaaatcaaggtgacaatataaacttcata |
39189252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 39131201 - 39131097
Alignment:
| Q |
22 |
acaactcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaatgacgggacttaattgattacctgtgcatgatgtaactgcatg |
121 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||||||| |
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|
| T |
39131201 |
acaactcaagttcatcagttagctcacatgggagcaacatcaaacttctttcatcaatggtgggacttaattgattacctgtgtacgacgtaactgcata |
39131102 |
T |
|
| Q |
122 |
attag |
126 |
Q |
| |
|
||||| |
|
|
| T |
39131101 |
attag |
39131097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 496 - 608
Target Start/End: Complemental strand, 39130949 - 39130837
Alignment:
| Q |
496 |
ttcaacttgactaagacattcaacgttaaaatgattaaagatgtttttaaaaagttagatagatcaggtaattaaaaagatcaacaataataaaagaaat |
595 |
Q |
| |
|
||||||||||||||||| | |||| ||||||||||||||||||| |||||||| |||| |||||| |||||||||||| ||||||| | | |||||||| |
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|
| T |
39130949 |
ttcaacttgactaagacctacaacattaaaatgattaaagatgtctttaaaaaattaggtagatctggtaattaaaaatgtcaacaacattgaaagaaat |
39130850 |
T |
|
| Q |
596 |
ggttgcaatgaaa |
608 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
39130849 |
ggttgaaatgaaa |
39130837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 39426287 - 39426395
Alignment:
| Q |
474 |
gatatgaaaactagtgaagattttcaacttgactaagacattcaacgttaaaatgattaaagatgtttttaaaaagttagatagatcaggtaattaaaaa |
573 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||| |||||||||| || ||| |||||||||||||||| | |
|
|
| T |
39426287 |
gatattaaaactagtgaagattttcaagttgactaagacatacaagattaacatgattaaacatgtttttaataaactaggcagatcaggtaattaaaga |
39426386 |
T |
|
| Q |
574 |
gatcaacaa |
582 |
Q |
| |
|
|||||||| |
|
|
| T |
39426387 |
tatcaacaa |
39426395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 663
Target Start/End: Complemental strand, 39124764 - 39124729
Alignment:
| Q |
628 |
tggttctattaaagcatcatattttttctctcttaa |
663 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39124764 |
tggttctattaaagcatcatattgtttctctcttaa |
39124729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 39189395 - 39189466
Alignment:
| Q |
239 |
atagtctgtaaggatattgaaatttgaaccagtactgaaactcataagcttaacaatatttgcaatatactt |
310 |
Q |
| |
|
||||| ||| || |||||| |||||||| || ||| | ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
39189395 |
atagtttgtcagcatattgtaatttgaatcaatacagtaactcataaacttaacactatttgcaatatactt |
39189466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 39131031 - 39130970
Alignment:
| Q |
365 |
taaataaaccactaaaacg-aggaaaatatcgtgtttaaaagcttccaaatatgtgcaagaa |
425 |
Q |
| |
|
||||||||||||||||||| || |||| || |||||||||||||||| || |||| |||||| |
|
|
| T |
39131031 |
taaataaaccactaaaacggagaaaaaaattgtgtttaaaagcttccgaaaatgttcaagaa |
39130970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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