View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15994_low_10 (Length: 239)

Name: NF15994_low_10
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15994_low_10
NF15994_low_10
[»] chr1 (2 HSPs)
chr1 (75-230)||(18118120-18118275)
chr1 (36-215)||(18125779-18125958)
[»] chr7 (15 HSPs)
chr7 (59-215)||(36221444-36221600)
chr7 (59-213)||(35939415-35939569)
chr7 (59-213)||(36217459-36217613)
chr7 (36-189)||(36225993-36226146)
chr7 (55-177)||(35946904-35947026)
chr7 (55-177)||(35958109-35958231)
chr7 (55-177)||(35977564-35977686)
chr7 (55-177)||(35998976-35999098)
chr7 (36-156)||(35955179-35955299)
chr7 (59-125)||(35965669-35965735)
chr7 (42-126)||(29602916-29603000)
chr7 (42-178)||(29743257-29743393)
chr7 (42-126)||(29750294-29750378)
chr7 (59-183)||(35982126-35982250)
chr7 (59-183)||(36003538-36003662)
[»] chr4 (1 HSPs)
chr4 (53-178)||(49340543-49340668)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 18118275 - 18118120
Alignment:
Q  75 ttggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgagtctgtgtctccaatga 174  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18118275 ttggaggattggggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgagtctgtgtctccaatta 18118176  T
Q  175 tttttatattaggcatataattatcaaaataatgaactctgattctgctgcttcaa 230  Q
    ||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||    
T  18118175 tttttatattatgcacataattatcaaaataatcaactttgattctgctgcttcaa 18118120  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 18125958 - 18125779
Alignment:
Q  36 atggcgataaaattctgtctgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatga 135  Q
    |||| ||||||| ||| ||||| |||||||| || |||||||| || ||| ||||||||||| | |||||| | || ||||| |||||||| || |||||    
T  18125958 atggtgataaaagtctatctgttattcccatggtgggaattggtggcttggggaagaccacattggcaaagcttgttttcaatgataagagaatagatga 18125859  T
Q  136 attttttcaattgaagatgtgagtctgtgtctccaatgatttttatattaggcatataattatcaaaataatgaactctg 215  Q
    | | ||||||||||||||||| || ||||||||  || ||||| | || ||||| ||||| || ||||| || |||||||    
T  18125858 actctttcaattgaagatgtgggtgtgtgtctctgataattttgacatcaggcaaataatcattaaaatcatcaactctg 18125779  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 36221444 - 36221600
Alignment:
Q  59 attcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgag 158  Q
    |||||||||||||||||||| || ||| |||||||||||||||||| |||||| ||||| ||||||||||| |||||  |||| ||||||||||| || |    
T  36221444 attcccatagttggaattggtggcttggggaagaccacacttgcaaggttggtgttcaatgataagaggatagatgatattttccaattgaagatttggg 36221543  T
Q  159 tctgtgtctccaatgatttttatattaggcatataattatcaaaataatgaactctg 215  Q
    | |||||||||||||||||| |||||||||  || ||||||||||| || |||||||    
T  36221544 tgtgtgtctccaatgattttgatattaggcgcattattatcaaaattatcaactctg 36221600  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 213
Target Start/End: Complemental strand, 35939569 - 35939415
Alignment:
Q  59 attcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgag 158  Q
    |||||||| || ||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||| |  || || |||| ||||||||||||||      
T  35939569 attcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggt 35939470  T
Q  159 tctgtgtctccaatgatttttatattaggcatataattatcaaaataatgaactc 213  Q
    | |||||||||||||| ||| |||| ||||| |||||||| |||||||| |||||    
T  35939469 tgtgtgtctccaatgagtttgatatcaggcagataattattaaaataatcaactc 35939415  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 36217459 - 36217613
Alignment:
Q  59 attcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgag 158  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | ||| ||||||||||| |||||| ||||||||||||||||||| |    
T  36217459 attcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtggg 36217558  T
Q  159 tctgtgtctccaatgatttttatattaggcatataattatcaaaataatgaactc 213  Q
      ||||||||   ||||||| |||| || || ||  |||||||||| || |||||    
T  36217559 catgtgtctctgttgattttgatataagacagatcgttatcaaaattatcaactc 36217613  T

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Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 36226146 - 36225993
Alignment:
Q  36 atggcgataaaattctgtctgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatga 135  Q
    |||| ||||||| | ||| ||| ||||||||||| |||||||| || ||| ||||||||||||||||||| ||||| ||||||||||||||| | |||||    
T  36226146 atggtgataaaagtttgtgtgttattcccatagtgggaattggtggcttggggaagaccacacttgcaaaattggtgttcaacgataagagggttgatga 36226047  T
Q  136 attttttcaattgaagatgtgagtctgtgtctccaatgatttttatattaggca 189  Q
      |||| |||||||||||||| || ||| ||||  |||||||| ||||||||||    
T  36226046 tcttttccaattgaagatgtgggtgtgtatctctgatgattttgatattaggca 36225993  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 35947026 - 35946904
Alignment:
Q  55 tgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatg 154  Q
    ||||||||| ||||| ||||||||||| ||| |||||||||||||||| |||| ||| ||||| |||||||||||  || || |||| || |||||||||    
T  35947026 tgtcattccaatagtgggaattggaggtttgtggaagaccacacttgcgaagtcggtgttcaatgataagaggatacatcaacttttccagttgaagatg 35946927  T
Q  155 tgagtctgtgtctccaatgattt 177  Q
    || || ||| ||||| |||||||    
T  35946926 tgggtgtgtatctccgatgattt 35946904  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 35958231 - 35958109
Alignment:
Q  55 tgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatg 154  Q
    ||||||||| ||||| ||||||||||| ||| | ||||| ||||||||||||| ||| ||||| ||||||||||| ||| || |||| || |||||||||    
T  35958231 tgtcattccaatagtgggaattggaggtttgggaaagacaacacttgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaagatg 35958132  T
Q  155 tgagtctgtgtctccaatgattt 177  Q
    || || ||| ||||| |||||||    
T  35958131 tgggtgtgtatctccgatgattt 35958109  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 35977686 - 35977564
Alignment:
Q  55 tgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatg 154  Q
    ||||||||| ||||| ||||||||||| ||| ||||||||||  ||||||||| ||| ||||| ||||||||||| ||| || |||| || |||||||||    
T  35977686 tgtcattccaatagtgggaattggaggtttggggaagaccaccattgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaagatg 35977587  T
Q  155 tgagtctgtgtctccaatgattt 177  Q
    || || ||| ||||  |||||||    
T  35977586 tgggtgtgtatctctgatgattt 35977564  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 35999098 - 35998976
Alignment:
Q  55 tgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatg 154  Q
    ||||||||| ||||| ||||||||||| ||| ||||||||||  ||||||||| ||| ||||| ||||||||||| ||| || |||| || |||||||||    
T  35999098 tgtcattccaatagtgggaattggaggtttggggaagaccaccattgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaagatg 35998999  T
Q  155 tgagtctgtgtctccaatgattt 177  Q
    || || ||| ||||  |||||||    
T  35998998 tgggtgtgtatctctgatgattt 35998976  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 35955299 - 35955179
Alignment:
Q  36 atggcgataaaattctgtctgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatga 135  Q
    |||| ||||||| | ||| ||| ||||||||| | || |||||||||||| | |||||||||||||||||||| || ||||| ||| | ||| | ||| |    
T  35955299 atggagataaaagtttgtgtgttattcccataataggtattggaggattgggaaagaccacacttgcaaagttagtgttcaatgatgaaagggtggatca 35955200  T
Q  136 attttttcaattgaagatgtg 156  Q
    | ||||  |||||||||||||    
T  35955199 aattttcaaattgaagatgtg 35955179  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 35965735 - 35965669
Alignment:
Q  59 attcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataaga 125  Q
    ||||||||| | |||||||| || ||| ||||||||||||||||||| ||||| ||||| |||||||    
T  35965735 attcccatactaggaattggtggcttggggaagaccacacttgcaaacttggtgttcaatgataaga 35965669  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 29603000 - 29602916
Alignment:
Q  42 ataaaattctgtctgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagag 126  Q
    |||||| ||| ||||| ||||| || |||||||||||||| ||| | ||||| ||||||||||||  ||| ||||| ||||||||    
T  29603000 ataaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagag 29602916  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 29743257 - 29743393
Alignment:
Q  42 ataaaattctgtctgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttt 141  Q
    |||||||||| ||||| ||||| || |||||||||||||| ||| | ||||| || |||||||||   || ||||| ||||||||  | || ||   |||    
T  29743257 ataaaattctctctgttattcctattgttggaattggaggcttgggaaagactacgcttgcaaagacagtgttcaatgataagagtttagacgagacttt 29743356  T
Q  142 tcaattgaagatgtgagtctgtgtctccaatgatttt 178  Q
    || ||| |||||||| || ||||||||| ||||||||    
T  29743357 tccattaaagatgtgggtgtgtgtctccgatgatttt 29743393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 29750294 - 29750378
Alignment:
Q  42 ataaaattctgtctgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagag 126  Q
    |||||| ||| ||||| ||||| || |||||||||||||| ||| | ||||| ||||||||||||  ||| ||||| ||||||||    
T  29750294 ataaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagag 29750378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 35982250 - 35982126
Alignment:
Q  59 attcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgag 158  Q
    |||||||| || ||||||||||| ||| | ||||| ||||||||||| ||||| ||||| ||| ||||||| ||  ||| |||| | |||| |||||| |    
T  35982250 attcccattgtgggaattggaggtttgggaaagactacacttgcaaaattggttttcaatgatgagaggatggaccaatcttttaagttgaggatgtggg 35982151  T
Q  159 tctgtgtctccaatgatttttatat 183  Q
    | || |||||  |||||||| ||||    
T  35982150 tgtgcgtctctgatgattttgatat 35982126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 36003662 - 36003538
Alignment:
Q  59 attcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgag 158  Q
    |||||||| || ||||||||||| ||| | ||||| ||||||||||| ||||| ||||| ||| ||||||| ||  ||| |||| | |||| |||||| |    
T  36003662 attcccattgtgggaattggaggtttgggaaagactacacttgcaaaattggttttcaatgatgagaggatggaccaatcttttaagttgaggatgtggg 36003563  T
Q  159 tctgtgtctccaatgatttttatat 183  Q
    | || |||||  |||||||| ||||    
T  36003562 tgtgcgtctctgatgattttgatat 36003538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 49340543 - 49340668
Alignment:
Q  53 tctgtcattcccatagttggaattggaggattgaggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaaga 152  Q
    ||||| ||||| || |||||||||||||||||  | || || |||||||||||| | || || || ||||||||  | |||||   ||||| ||||||||    
T  49340543 tctgttattcctattgttggaattggaggattaggaaaaactacacttgcaaaggtcgtgtttaatgataagagtttagatgagacttttccattgaaga 49340642  T
Q  153 tgtgagtctgtgtctccaatgatttt 178  Q
    |||| || ||||||||  ||||||||    
T  49340643 tgtgggtgtgtgtctctgatgatttt 49340668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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