View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15994_low_5 (Length: 312)
Name: NF15994_low_5
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15994_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 19596915 - 19596743
Alignment:
| Q |
123 |
gtaatattcggtgaagttctatgagttgttaattaattatattattgttgtttcagatttttgacattatcagacaattcaaagaagattgaggaatgaa |
222 |
Q |
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| T |
19596915 |
gtaatattcggtgaagttctatcagttgttaattaattatattattgttgtttcagatttttcacattatcagacaattcaaagaagattgaggaatgaa |
19596816 |
T |
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| Q |
223 |
tgaagaagattgaggagtgaataaagatgttcaaatttacatattagttacattttcaggagatatgatcatg |
295 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19596815 |
tgaagaagattaaggagtgaataaagatattcaaatttacatattagttacattttcaggagatatgatcatg |
19596743 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 19597033 - 19596963
Alignment:
| Q |
3 |
ttgaaatcttcatagcctttgccgcaacctcttgtgttttctatctttcttacgtggtaagggagttcatg |
73 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597033 |
ttgaaatcttcatagtctttgccgcaacctcttgtgttttctatctttcttacgtggtaagggagttcatg |
19596963 |
T |
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