View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15994_low_6 (Length: 310)
Name: NF15994_low_6
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15994_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 8648102 - 8647819
Alignment:
| Q |
20 |
atatgcacatgtatatataataaatacaaaccatagtaactctacaagcataactattatagtaaaaaagtgttaattggaaaacacaacatttcaaatc |
119 |
Q |
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| T |
8648102 |
atatgcacatgtatatataa---atacaaaccatagtaactctacaagcataactattatagtaaaaaagtgttaattggaaaacacaacatttcaaatc |
8648006 |
T |
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| Q |
120 |
aattaaaatgaagttttttattagctataagactatgtccttactagggnnnnnnnnaatcatggtaacattggtgtcacaagttcaaagcagtccttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648005 |
aattaaaatgaagttttttattagctataagactatgtccttactaggtttttttttaatcatggtaacattggtgtcacaagttcaaagcagtccttgc |
8647906 |
T |
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| Q |
220 |
tcaagcacatttttctcatcacttgtgcaactcattccttgtagaggagcagttgctccttttagtccaattccaccctatgcttct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
8647905 |
tcaagcacatttttctcatcacttgtgcaactcattccttgtaggggagcagttgctccttttagtccaattccacccaatgattct |
8647819 |
T |
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