View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15994_low_7 (Length: 289)
Name: NF15994_low_7
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15994_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 269898 - 269643
Alignment:
| Q |
18 |
atatattggcataatcatcctttgcaaaacaatttttgaataactcctgaaattgacattcattctcacatcagaaattgaaagagttttaactcctgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
269898 |
atatattggcataatcatcctttgcaaaacaacttttgaataactcctgaaattgacattcattctcacatcagaaattgaaagagttttaactcctgaa |
269799 |
T |
|
| Q |
118 |
atccagattgcttgattcgagagattattgactattgttgttttattagtacaagctaaattcaaaagatgacctggtgtgaatacaataaatggcaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
269798 |
atccagattgcttgattcgagagattatcgactatttttgttttattagtacaagctaaattcaaaagatgacctggtgtgaatacaataaatggcaatg |
269699 |
T |
|
| Q |
218 |
cagttcaaattcttaatgggataatatgaaacctcaataatgtgatggtatgtatg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
269698 |
cagttcaaattcttaatgggataatatgaaacctcaataatgtgatggtatgtatg |
269643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University