View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15994_low_8 (Length: 279)
Name: NF15994_low_8
Description: NF15994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15994_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 37879895 - 37879641
Alignment:
| Q |
18 |
aagagcaattctcctgacccaccacctggtgtctcaaaaatcaccgtttccaaggctgaaaaatctattgcagggaatctttgtcgctgtactggttacc |
117 |
Q |
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| T |
37879895 |
aagagcaattttcctgacccaccacctggtgtctcaaaaatcaccgtttccaaggctgaaaaatctattgcagggaatctttgtcgctgtactggttacc |
37879796 |
T |
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| Q |
118 |
gaccgattgctgatgcctgcaaaagttttgcagctgatgtcgatatggaggatcttggtttgaactctttctggaaaaagggagagagcaaagaatcaaa |
217 |
Q |
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| T |
37879795 |
gaccgattgctgatgcctgcaaaagttttgcagctgatgtcgatatggaggatcttggtttgaactctttctggaaaaagggagagagcaaagaatcaaa |
37879696 |
T |
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| Q |
218 |
gcttaataagttgcctcgatacgatcgtgatcacaagaatatcgagtttcctatg |
272 |
Q |
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| T |
37879695 |
gcttaataagttgcctcgatatgatcgtgatcacaagaatatcgagtttcctatg |
37879641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 37863627 - 37863433
Alignment:
| Q |
49 |
tctcaaaaatcaccgtttccaaggctgaaaaatctattgcagggaatctttgtcgctgtactggttaccgaccgattgctgatgcctgcaaaagttttgc |
148 |
Q |
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| T |
37863627 |
tctcaaaagttactgtttctgaggctgaaaaggctattgcagggaacctttgtcgctgcactggttatcggtccattgctgatgcctgcaaaagttttgc |
37863528 |
T |
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| Q |
149 |
agctgatgtcgatatggaggatcttggtttgaactctttctggaaaaagggagagagcaaagaatcaaagcttaataagttgcctcgatacgatc |
243 |
Q |
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| T |
37863527 |
tgctgatgttgatatggaggatttggggttgaactctttctggagaaaaggagaaagcaaggacttacagcttagtaaaatgcctcgatatgatc |
37863433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 42437001 - 42437193
Alignment:
| Q |
17 |
aaagagcaattctcctgacccaccacctggtgtctcaaaaatcaccgtttccaaggctgaaaaatctattgcagggaatctttgtcgctgtactggttac |
116 |
Q |
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||||| ||||||||| || |||||| ||||| ||||||||||| | |||| |||||||||||||||||||||| | || |||||||| || ||||||||| |
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| T |
42437001 |
aaagaacaattctccagagccaccagctggtttctcaaaaatctctgttttcaaggctgaaaaatctattgcatgtaacctttgtcgatgcactggttac |
42437100 |
T |
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| Q |
117 |
cgaccgattgctgatgcctgcaaaagttttgcagctgatgtcgatatggaggatcttggtttgaactctttctgga-aaaagggagagagcaa |
208 |
Q |
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| T |
42437101 |
cgataggttgctgatgcctgcaaaagttttgcagaggatgttgacatggaggatctcggtttgaactctttctggagaaaaggaagaaagcaa |
42437193 |
T |
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