View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15995_high_7 (Length: 222)
Name: NF15995_high_7
Description: NF15995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15995_high_7 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 49041932 - 49041728
Alignment:
| Q |
18 |
gtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcggaggta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49041932 |
gtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagcttagaacaaacattaaaagctataatctcggaggta |
49041833 |
T |
|
| Q |
118 |
tgggttgtagtgctggtcttatttcaattgatcttgctaaagatcttttgaaagcaaatccaaattcctacgctgtcgtcttgagcacagagaatttaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49041832 |
tgggttgtagtgctggtcttatttcaattgatcttgctaaagatcttttgaaagcaaatccaaattcctacgctgtcgtcttgagcaccgagaatttaac |
49041733 |
T |
|
| Q |
218 |
cctca |
222 |
Q |
| |
|
||||| |
|
|
| T |
49041732 |
cctca |
49041728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 26463861 - 26464026
Alignment:
| Q |
18 |
gtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcggaggta |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26463861 |
gtaaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatcttggaggta |
26463960 |
T |
|
| Q |
118 |
tgggttgtagtgctggtcttatttcaattgatcttgctaaagatcttttgaaagcaaatccaaattc |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
26463961 |
tgggttgtagtgctggtcttatttcaattgatcttgctaaa-atcttttgaaagcaagtccaaattc |
26464026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 31197650 - 31197769
Alignment:
| Q |
64 |
ttgtgaaccattacaagctaagaacaaacattaaaagctataatctcggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaagatct |
163 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31197650 |
ttgtgaatcattacaagctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaa-atct |
31197748 |
T |
|
| Q |
164 |
tttgaaagcaaatccaaattc |
184 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
31197749 |
tttgaaagcaagtccaaattc |
31197769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 34051978 - 34052114
Alignment:
| Q |
21 |
aattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcggaggtatgg |
120 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||||| ||||||||||| ||||| ||| ||||| || || |||| |||||||| || ||||||| |
|
|
| T |
34051978 |
aattgtagtttgtttaatcctacaccttctctttctgctatgattgtgaatcattataagttaagagggaatgttcaaagttataatcttggtggtatgg |
34052077 |
T |
|
| Q |
121 |
gttgtagtgctggtcttatttcaattgatcttgctaa |
157 |
Q |
| |
|
||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
34052078 |
gttgtagtgctggacttatctctattgaccttgctaa |
34052114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 15237149 - 15237282
Alignment:
| Q |
21 |
aattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcggaggtatgg |
120 |
Q |
| |
|
||||||||||||||||| ||||| || || |||||||| ||||||||||| ||||| ||| | ||| ||| || || |||||||| || ||||||| |
|
|
| T |
15237149 |
aattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtggtatgg |
15237248 |
T |
|
| Q |
121 |
gttgtagtgctggtcttatttcaattgatcttgc |
154 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| |
|
|
| T |
15237249 |
gttgtagtgctggtcttatctctattgaccttgc |
15237282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 26452760 - 26452900
Alignment:
| Q |
21 |
aattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcggaggtatgg |
120 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| || |||||||| ||| | || || |||| || |||| ||| | |||| | || ||||||| |
|
|
| T |
26452760 |
aattgtagtttgtttaatccaacgccatcactttcagctatgattgttaacaaatataaattaaggggtaatattagaagttttaatttgggtggtatgg |
26452859 |
T |
|
| Q |
121 |
gttgtagtgctggtcttatttcaattgatcttgctaaagat |
161 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
26452860 |
gttgtagtgctggtgttatagctattgatcttgctaaagat |
26452900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University