View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15996_high_5 (Length: 394)
Name: NF15996_high_5
Description: NF15996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15996_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 140 - 386
Target Start/End: Original strand, 31697814 - 31698060
Alignment:
| Q |
140 |
atgcataaggagtatgaaaagtgcaatttgcttcaaatatcagatctcgaaggttattcttttgaagaccaatgtgaagagattccgagataaaacgtga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31697814 |
atgcataaggagtatgaaaagtgcaatttgcgtcaaatatcagatctcgaaggttattcttttgaagaccaatgtgaagagattccgagatacaacgtga |
31697913 |
T |
|
| Q |
240 |
agtcttttcaagcaaaggttgatcgttgttcaacattcaaaattcagtgtaataagaagcttgaaagactccaacaaagttagaagacacttaacattca |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31697914 |
agtcttttcaagcaaaggttgatcgttgttcaacattcaaaattcagtgtaataagaagcttgaaagactccaacaaagttagaagacacttaacattca |
31698013 |
T |
|
| Q |
340 |
tgcattgcaggagttagtttattttctcttaagtaaacagtataatc |
386 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31698014 |
tgcattgcaggagttggtttattttctcttaagtaaacagtataatc |
31698060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 31697231 - 31697351
Alignment:
| Q |
18 |
aatggcagaggcattcatagtttttgagttaatttccttaatgacagatttttctttcttcttatccttctttgaagtttgcttctaaggaacctatgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31697231 |
aatggcagaggcattcatagtttttgagttaatttccttaatgacagatttttctttcttcttatccttctttgaagtttacttctaaggaacctatgag |
31697330 |
T |
|
| Q |
118 |
cttaaggcacttagatcagat |
138 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31697331 |
cttaaggcacttagatcagat |
31697351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University