View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15996_high_7 (Length: 343)
Name: NF15996_high_7
Description: NF15996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15996_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 32012552 - 32012243
Alignment:
| Q |
15 |
cataggtggcgctcttgttagtgaagagtgtgatgtcaaccaagtaaagcagatatgtctgaacaaccaagtctcggttctgctgcatcacatcctcatc |
114 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | ||| |
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| T |
32012552 |
cataggtggcactattgttagtgaagagtgtgatgtcaaccaagtaaagcagatatgtctgaacaaccaggtctcggttctgctacatcatatcttgatc |
32012453 |
T |
|
| Q |
115 |
accctcagtctcatctgcagtttctaccaaaagatgattaaaaaactcctctcttaagaaattgtaaggtgcatgagcaccttcatgactcccatccaga |
214 |
Q |
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||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
32012452 |
accctcaacctcatctgcagttgctatcaaaagatgattaaaaaactcctctcttaagaaattgtaaggtgcatgagcaccttcatggcacccatctaga |
32012353 |
T |
|
| Q |
215 |
actcaagcatcctccgatttagcccataacaactcaaccatcatatctaccacaacaagtttggaaacaatagcttcatggttcaggagaaggccctcga |
314 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||| |
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| T |
32012352 |
actc-agcatactccgatttagcccataacaactcaaccatcatatctaccacaataagttaggaaacaataacttcatggtccaggagaaggccctcga |
32012254 |
T |
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| Q |
315 |
tggggagatgc |
325 |
Q |
| |
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||||||||||| |
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| T |
32012253 |
tggggagatgc |
32012243 |
T |
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