View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15996_low_1 (Length: 524)

Name: NF15996_low_1
Description: NF15996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15996_low_1
NF15996_low_1
[»] chr1 (7 HSPs)
chr1 (12-506)||(29449014-29449485)
chr1 (132-201)||(29457080-29457149)
chr1 (409-477)||(29462215-29462283)
chr1 (378-452)||(29444247-29444321)
chr1 (378-452)||(29454254-29454328)
chr1 (60-107)||(29456984-29457031)
chr1 (202-254)||(29461783-29461834)
[»] chr2 (5 HSPs)
chr2 (378-475)||(9363665-9363762)
chr2 (378-452)||(12019793-12019867)
chr2 (378-452)||(11988326-11988400)
chr2 (382-452)||(12007150-12007220)
chr2 (374-474)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (378-474)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (377-441)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Original strand, 29449014 - 29449485
Alignment:
Q  12 agaagcaaaggtactacacaaaatctaatacaagaaactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgccc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449014 agaagcaaaggtactacacaaaatctaatacaagaaactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgccc 29449113  T
Q  112 nnnnnnnaatcatgtcttgaatattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttctgctgtagactttgaat 211  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29449114 tttttttaatcatgtcttgaatattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttatgctgtagactttgaat 29449213  T
Q  212 gccatccctttgtgcccaaggttgttttatagatccaacagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacattcg 311  Q
    |||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449214 gccatccctttgtgc-------------------ccaacagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacattcg 29449294  T
Q  312 gcccatgcacgtgactagctaatttgttgagtttacttatatgatattcatgtgnnnnnnnnacaaggatgacttcttgtaccaaggatttaaatcgaca 411  Q
    ||||||    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  29449295 gcccat----gtgactagctaatttgttgagtttacttatatgatattcatgtgttttttttacaaggatgacttcttgtaccaaggatttaaatcgaca 29449390  T
Q  412 ttgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataagg 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449391 ttgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataagg 29449485  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 29457080 - 29457149
Alignment:
Q  132 atattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttctgctgta 201  Q
    |||||||||||||||  || |||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  29457080 atattttttctacaaggtatgttttatgttgtaatatcataatgtggactattattccttttctgctgta 29457149  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 477
Target Start/End: Original strand, 29462215 - 29462283
Alignment:
Q  409 acattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctagt 477  Q
    ||||||||||||| |||||||||||||| ||||||| ||| |||| | ||||||||| |||||||||||    
T  29462215 acattgtaagggaatgaaagaagaaccaatgatgtgtagcagaaaccaaatgctcaagttgtttctagt 29462283  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 29444247 - 29444321
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||| ||||||||| |||||||||||||  || |||||||||||||||| ||||||||  ||||| | |||||||    
T  29444247 ggataacttcttgtcccaaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaa 29444321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 29454254 - 29454328
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||||||||||||| || ||||||||||| || ||||||| |||||||| |||||| |  ||||||| |||||||    
T  29454254 ggatgacttcttgtcccgaggatttaaattgaaattgtaatggagtgaaggaagaatctttgatgtgtagctgaa 29454328  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 29456984 - 29457031
Alignment:
Q  60 aaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaac 107  Q
    |||| |||||| ||||||||||||||||| | ||||||||||||||||    
T  29456984 aaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaac 29457031  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 29461783 - 29461834
Alignment:
Q  202 gactttgaatgccatccctttgtgcccaaggttgttttatagatccaacagaa 254  Q
    |||||||| |||||| |||| ||||| ||||||||||||||||||||| ||||    
T  29461783 gactttgactgccattcctt-gtgcctaaggttgttttatagatccaatagaa 29461834  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 475
Target Start/End: Complemental strand, 9363762 - 9363665
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttcta 475  Q
    |||||||||||||| |||||||||||||| | |||||||||||||||| ||||||||||  |||||| |||||||  || || ||||| |||||||||    
T  9363762 ggatgacttcttgtcccaaggatttaaattgtcattgtaagggagtgatagaagaaccagggatgtgtagctgaagccggatactcaagttgtttcta 9363665  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 12019793 - 12019867
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||| |||||| |  ||||||| |||||||    
T  12019793 ggatgacttcttgtccaaaggatttaaattgacattgtaagggagtgaaggaagaatcgttgatgtgtagctgaa 12019867  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 11988326 - 11988400
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    ||||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||  || |||| |||||||    
T  11988326 ggatgacttcttgtcaaaaggatttaaattgacattgtaagggagtgaaggaagaacctttgttgtgtagctgaa 11988400  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 452
Target Start/End: Original strand, 12007150 - 12007220
Alignment:
Q  382 gacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||||| ||| || ||||||||||| ||| ||||||||||||||| ||||||||  | ||||| |||||||    
T  12007150 gacttcctgtcccgaggatttaaattgaccttgtaagggagtgaaggaagaacctgttatgtgtagctgaa 12007220  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 474
Target Start/End: Complemental strand, 9287882 - 9287782
Alignment:
Q  374 acaaggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttc 473  Q
    ||||||| ||||| |||| || ||||||||||| || |||||||||||  ||  |||| |||  ||||||| ||||||||  | |||||||| |||||||    
T  9287882 acaaggacgactttttgtcccgaggatttaaattgagattgtaagggatggatggaagtacctgtgatgtgcagctgaaacaggatgctcaagttgtttc 9287783  T
Q  474 t 474  Q
    |    
T  9287782 t 9287782  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 41968300 - 41968397
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaac-gaatgctcaaattgtttct 474  Q
    |||||||||||||| |||||||||||||| || |||||||||||  ||| |||| |||  ||||||| |||||||| | | |||||||| ||||||||    
T  41968300 ggatgacttcttgtcccaaggatttaaattgagattgtaagggatggaaggaaggacctgtgatgtgcagctgaaaccaggatgctcaagttgtttct 41968397  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 45242715 - 45242651
Alignment:
Q  377 aggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgat 441  Q
    ||||||||||||||| ||| |||||||||| ||||||| ||| |||  || ||||||||| ||||    
T  45242715 aggatgacttcttgttccagggatttaaattgacattgaaagagagccaaggaagaaccagtgat 45242651  T

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