View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15996_low_2 (Length: 492)

Name: NF15996_low_2
Description: NF15996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15996_low_2
NF15996_low_2
[»] chr2 (1 HSPs)
chr2 (11-492)||(37136037-37136518)


Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Original strand, 37136037 - 37136518
Alignment:
Q  11 catcatcaagaagctgacctcaatcattgtctgaatatcaaattgccatttttgtttctttctttcaaatatgtgccctactttctaaaagctctcattt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37136037 catcatcaagaagctgacctcaatcattgtctgaatatcaaattgccatttttgtttgtttctttcaaatatgtgccctactttctaaaagctctcattt 37136136  T
Q  111 aaggctaaaatactcatctttatgtcttttgtgtactttgcttgatacaaattatttgttgagaagtttgcttggtagaacttgtttattgtttctcgat 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37136137 aaggttaaaatactcatctttatgtcttttgtgtactttgcttgatacaaattatttgttgagaagtttgcttggtagaacttgtttattgtttctcggt 37136236  T
Q  211 aaagtattaagagttcaattcgatctttactgcacacaaattaactattaacatttgtttatnnnnnnntctttttccgagcacctgaaaatgttttgtt 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||    
T  37136237 aaagtattaagagttcaattcgatctttactgcaaacaaattaactattaacatttgtttataaaaaaatctttctccgagcacctgaaaatgttttgtt 37136336  T
Q  311 attttttcagttgcccggaagaacagataacgaaatcaaaaacttttggaacacaagaatgaaaaggtgtcaaagagccggcttacctctttatcctcca 410  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37136337 gttttttcagttgcccggaagaacagataacgaaatcaaaaacttttggaacacaagaatgaaaaggcgtcaaagagccggcttacctctttatcctcca 37136436  T
Q  411 gaaatccaagcagaagctattgcatacaatgataaactattgcaactacaacatcaacctttatcttcttcatcattatcat 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136437 gaaatccaagcagaagctattgcatacaatgataaactattgcaactacaacatcaacctttatcttcttcatcattatcat 37136518  T

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