View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15996_low_3 (Length: 429)

Name: NF15996_low_3
Description: NF15996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15996_low_3
NF15996_low_3
[»] chr8 (11 HSPs)
chr8 (162-415)||(43909108-43909361)
chr8 (44-175)||(43909380-43909511)
chr8 (1-46)||(3873749-3873794)
chr8 (1-45)||(3265708-3265752)
chr8 (1-45)||(32339094-32339138)
chr8 (1-45)||(41384493-41384537)
chr8 (1-45)||(43529871-43529915)
chr8 (1-47)||(15808960-15809006)
chr8 (2-44)||(41382420-41382462)
chr8 (1-45)||(28283769-28283813)
chr8 (1-45)||(608470-608514)
[»] chr6 (11 HSPs)
chr6 (295-412)||(31615815-31615932)
chr6 (1-45)||(30966923-30966967)
chr6 (1-47)||(30035152-30035198)
chr6 (1-45)||(5275884-5275928)
chr6 (1-46)||(26933114-26933159)
chr6 (1-45)||(12196060-12196104)
chr6 (3-45)||(22858494-22858536)
chr6 (1-46)||(19705121-19705166)
chr6 (1-45)||(2629435-2629479)
chr6 (1-43)||(20526548-20526590)
chr6 (1-46)||(18317750-18317795)
[»] chr7 (29 HSPs)
chr7 (1-45)||(38395986-38396030)
chr7 (1-45)||(47865328-47865372)
chr7 (1-51)||(7352202-7352252)
chr7 (1-46)||(37412672-37412717)
chr7 (1-45)||(443326-443370)
chr7 (1-45)||(3035415-3035459)
chr7 (1-45)||(7092724-7092768)
chr7 (1-45)||(7094971-7095015)
chr7 (1-45)||(7472530-7472574)
chr7 (1-45)||(11756925-11756969)
chr7 (1-45)||(18345237-18345281)
chr7 (1-45)||(20299155-20299199)
chr7 (1-45)||(21470839-21470883)
chr7 (1-49)||(21989849-21989897)
chr7 (1-45)||(28487249-28487293)
chr7 (1-46)||(3676996-3677041)
chr7 (1-46)||(20625733-20625778)
chr7 (1-46)||(20629624-20629669)
chr7 (1-46)||(20642043-20642088)
chr7 (1-45)||(7349823-7349867)
chr7 (1-45)||(7470577-7470621)
chr7 (1-45)||(31156456-31156500)
chr7 (1-45)||(38393683-38393727)
chr7 (1-45)||(1606171-1606215)
chr7 (1-45)||(1849665-1849709)
chr7 (1-45)||(28485261-28485305)
chr7 (1-35)||(20297108-20297142)
chr7 (1-45)||(42331549-42331593)
chr7 (1-37)||(43254033-43254069)
[»] chr4 (12 HSPs)
chr4 (1-48)||(56030186-56030233)
chr4 (1-51)||(47211264-47211314)
chr4 (1-46)||(17662782-17662827)
chr4 (1-46)||(24347958-24348003)
chr4 (1-45)||(5100743-5100787)
chr4 (1-45)||(22135175-22135219)
chr4 (1-47)||(44600384-44600430)
chr4 (1-46)||(38890657-38890702)
chr4 (1-45)||(14787977-14788021)
chr4 (1-45)||(22132943-22132987)
chr4 (6-43)||(19322410-19322447)
chr4 (1-45)||(14789527-14789571)
[»] chr3 (16 HSPs)
chr3 (1-51)||(25533101-25533151)
chr3 (1-46)||(1313081-1313126)
chr3 (1-45)||(746422-746466)
chr3 (1-45)||(10622083-10622127)
chr3 (1-45)||(41848804-41848848)
chr3 (2-45)||(42991953-42991996)
chr3 (1-48)||(53918206-53918253)
chr3 (1-47)||(455571-455617)
chr3 (1-43)||(42989954-42989996)
chr3 (1-45)||(457950-457994)
chr3 (1-45)||(6561613-6561657)
chr3 (1-45)||(51943042-51943086)
chr3 (1-45)||(53916038-53916082)
chr3 (1-47)||(4104439-4104485)
chr3 (5-46)||(27000082-27000123)
chr3 (1-45)||(27636168-27636212)
[»] chr1 (20 HSPs)
chr1 (1-46)||(17325183-17325228)
chr1 (1-46)||(24325346-24325391)
chr1 (1-46)||(28998800-28998845)
chr1 (1-46)||(29004516-29004561)
chr1 (1-45)||(4131838-4131882)
chr1 (1-45)||(9459969-9460013)
chr1 (1-45)||(9463796-9463840)
chr1 (1-45)||(27337488-27337532)
chr1 (1-45)||(27339686-27339730)
chr1 (1-45)||(39931762-39931806)
chr1 (1-45)||(46432592-46432636)
chr1 (1-45)||(47905956-47906000)
chr1 (1-45)||(48664852-48664896)
chr1 (1-45)||(31736071-31736115)
chr1 (1-47)||(15295395-15295441)
chr1 (1-45)||(6997214-6997258)
chr1 (1-45)||(45693980-45694024)
chr1 (6-45)||(6997388-6997427)
chr1 (1-46)||(2949771-2949816)
chr1 (1-45)||(6115673-6115718)
[»] scaffold1674 (1 HSPs)
scaffold1674 (1-45)||(51-95)
[»] chr5 (17 HSPs)
chr5 (1-45)||(15551925-15551969)
chr5 (1-45)||(18466411-18466455)
chr5 (1-45)||(25803707-25803751)
chr5 (1-45)||(26097421-26097465)
chr5 (1-45)||(27912219-27912263)
chr5 (1-48)||(18596323-18596370)
chr5 (1-47)||(21288527-21288573)
chr5 (1-46)||(15143219-15143264)
chr5 (1-42)||(18509863-18509904)
chr5 (1-45)||(3373586-3373630)
chr5 (1-45)||(18468698-18468742)
chr5 (1-49)||(18511758-18511806)
chr5 (1-45)||(26098797-26098841)
chr5 (1-45)||(27910135-27910179)
chr5 (1-46)||(6661989-6662034)
chr5 (1-38)||(17415856-17415893)
chr5 (1-45)||(40221282-40221326)
[»] chr2 (8 HSPs)
chr2 (1-45)||(23452785-23452829)
chr2 (1-45)||(42924050-42924094)
chr2 (1-46)||(35218521-35218566)
chr2 (1-54)||(42452440-42452493)
chr2 (5-49)||(27136465-27136509)
chr2 (1-45)||(35216140-35216184)
chr2 (1-45)||(27583863-27583907)
chr2 (1-38)||(34575659-34575696)
[»] scaffold0468 (1 HSPs)
scaffold0468 (1-44)||(2141-2184)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-46)||(12017-12062)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-45)||(78883-78927)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-45)||(51709-51753)
scaffold0005 (1-45)||(50159-50203)
[»] scaffold0511 (1 HSPs)
scaffold0511 (1-46)||(1734-1779)
[»] scaffold0133 (1 HSPs)
scaffold0133 (1-45)||(4546-4590)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 162 - 415
Target Start/End: Complemental strand, 43909361 - 43909108
Alignment:
Q  162 tagttttaacctaaccacaagtccatgatttgtagctggttactacatggattttaatttgaacttataagttttgatgtgaaatcttcttctaaaagag 261  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909361 tagttttaacctaactacaagtccatgatttgtagctggttactacatggattttaatttgaacttataagttttgatgtgaaatcttcttctaaaagag 43909262  T
Q  262 agggagaaaatgtaattatcattatcttaccgtgatattccggtactaggagcaactttggtgctagaagcctcattcttgcataaatttcaggtctcct 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909261 agggagaaaatgtaattatcattatcttaccgtgatattccggtactaggagcaactttggtgctagaagcctcattcttgcataaatttcaggtctcct 43909162  T
Q  362 gccatgctcatagggctcattctctacatatctctgcaacaaaacctgaaactg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909161 gccatgctcatagggctcattctctacatatctctgcaacaaaacctgaaactg 43909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 43909511 - 43909380
Alignment:
Q  44 caataatactaattgaaaacaaggatagaggatatgtacactatggtataaataagttttaatccatcttggagtatctcttcatcattattgatatatt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909511 caataatactaattgaaaacaaggatagaggatatgtacactatggtataaataagttttaatccatcttggagtatctcttcatcattattgatatatt 43909412  T
Q  144 ttaaaataggtttatatctagttttaacctaa 175  Q
    ||||||||||||||||||||||||||||||||    
T  43909411 ttaaaataggtttatatctagttttaacctaa 43909380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3873794 - 3873749
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  3873794 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 3873749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3265708 - 3265752
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  3265708 gcaacaatattctccatccatcaaattttgagtcatactacaaca 3265752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32339138 - 32339094
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  32339138 gcaacaatattctccatccatcaaattttgagtcatactacaaca 32339094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41384537 - 41384493
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  41384537 gcaacaatattctccatccatcaaattttgagtcatactacaaca 41384493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43529915 - 43529871
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  43529915 gcaacaatattctccatccatcaaattttgagtcatactacaaca 43529871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15809006 - 15808960
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaat 47  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15809006 gcaacaatattctccatccatcaaattttgagtcatactaaaacaat 15808960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 41382462 - 41382420
Alignment:
Q  2 caacaatattctccatccatcaaatttggagtcatactacaac 44  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  41382462 caacaatattctccatccatcaaattttgagtcatactacaac 41382420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28283769 - 28283813
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  28283769 gcaaaaatattctccatccatcaaattttgagtcatactacaaca 28283813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 608514 - 608470
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| | |||||||||||| |||| |||||||||||    
T  608514 gcaacaatattcttcttccatcaaattttgagtgatactacaaca 608470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 31615932 - 31615815
Alignment:
Q  295 gatattccggtactaggagcaactttggtgctagaagcctcattcttgcataaatttcaggtctcctgccatgctcatagggctcattctctacatatct 394  Q
    ||||||| || ||||||||||| |||||||| | | | |||||||| |||||||| || |||||||| |||  |||||| || |||||||||||||||||    
T  31615932 gatattcagggactaggagcaattttggtgccatatgtctcattctagcataaatctctggtctcctaccaaactcataaggttcattctctacatatct 31615833  T
Q  395 ctgcaacaaaacctgaaa 412  Q
     ||||||||||| |||||    
T  31615832 ttgcaacaaaacttgaaa 31615815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30966967 - 30966923
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30966967 gcaacaatattctccatccatcaaatttggagtcatactacaaca 30966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30035152 - 30035198
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaat 47  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  30035152 gcaacaatattctccatccatcaaattttgagtcatactacaacaat 30035198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5275884 - 5275928
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  5275884 gcaacaatattctccatccatcaaattttgagtcatactacaaca 5275928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26933114 - 26933159
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||    
T  26933114 gcaacaatattctccatccatcaatttttgagtcatactacaacaa 26933159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12196060 - 12196104
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  12196060 gcaacaatattctccatccatcaatttttgagtcatactacaaca 12196104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 22858494 - 22858536
Alignment:
Q  3 aacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  22858494 aacaatattcttcatccatcaaattttgagtcatactacaaca 22858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19705121 - 19705166
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||    
T  19705121 gcaacaatattcttcttccatcaaattttgagtcatactacaacaa 19705166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2629435 - 2629479
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||    
T  2629435 gcaacaatattcttcttccatcaaattttgagtcatactacaaca 2629479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20526590 - 20526548
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaa 43  Q
    ||||||||||||| || ||||||||||| ||||||||||||||    
T  20526590 gcaacaatattcttcacccatcaaattttgagtcatactacaa 20526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18317795 - 18317750
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||| | ||| |||||||| |||||||||||||||||    
T  18317795 gcaacaatattcttcttccttcaaattttgagtcatactacaacaa 18317750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38396030 - 38395986
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38396030 gcaacaatattctccatccatcaaatttggagtcatactacaaca 38395986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47865372 - 47865328
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47865372 gcaacaatattctccatccatcaaatttggagtcatactacaaca 47865328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7352202 - 7352252
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaataata 51  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  7352202 gcaacaatattctccatccatcaatttttgagtcatactacaacaataata 7352252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37412672 - 37412717
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  37412672 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 37412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 443370 - 443326
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  443370 gcaacaatattctccatccatcaaattttgagtcatactacaaca 443326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3035459 - 3035415
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  3035459 gcaacaatattctccatccatcaaattttgagtcatactacaaca 3035415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7092724 - 7092768
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  7092724 gcaacaatattctccatccatcaaattttgagtcatactacaaca 7092768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7094971 - 7095015
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  7094971 gcaacaatattctccatccatcaaattttgagtcatactacaaca 7095015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7472530 - 7472574
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  7472530 gcaacaatattctccatccatcaaattttgagtcatactacaaca 7472574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11756969 - 11756925
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  11756969 gcaacaatattctccatccatcaaattttgagtcatactacaaca 11756925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18345281 - 18345237
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  18345281 gcaacaatattctccatccatcaaattttgagtcatactacaaca 18345237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20299199 - 20299155
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  20299199 gcaacaatattctccatccatcaaattttgagtcatactacaaca 20299155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21470839 - 21470883
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  21470839 gcaacaatattctccatccatcaaatttggagtcaaactacaaca 21470883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21989897 - 21989849
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaataa 49  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  21989897 gcaacaatattctccatccatcaaattttgggtcatactacaacaataa 21989849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28487293 - 28487249
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  28487293 gcaacaatattctccatccatcaaattttgagtcatactacaaca 28487249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3677041 - 3676996
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  3677041 gcaacaatattctccatctatcaaattttgagtcatactacaacaa 3676996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20625778 - 20625733
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  20625778 gcaacaatattctccatccatcaaattttgagtcatactagaacaa 20625733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20629669 - 20629624
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  20629669 gcaacaatattctccatccatcaaattttgagtcatactagaacaa 20629624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20642088 - 20642043
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  20642088 gcaacaatattctccatccatcaaattttgagtcatactagaacaa 20642043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7349823 - 7349867
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  7349823 gcaacaatattctccatccatcaatttttgagtcatactacaaca 7349867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7470577 - 7470621
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  7470577 gcaataatattctccatccatcaaattttgagtcatactacaaca 7470621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31156456 - 31156500
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  31156456 gcaacaatattctccatccatcaatttttgagtcatactacaaca 31156500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38393727 - 38393683
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  38393727 gcaacaatattctccatccatcaaatttagaatcatactacaaca 38393683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1606215 - 1606171
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||    
T  1606215 gcaacaatattcttcttccatcaaattttgagtcatactacaaca 1606171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1849709 - 1849665
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||    
T  1849709 gcaacaatattcttcttccatcaaattttgagtcatactacaaca 1849665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28485305 - 28485261
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| |||||||||||||| || |||||||||||||    
T  28485305 gcaacaatattcttcatccatcaaattttgaatcatactacaaca 28485261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20297142 - 20297108
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtca 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  20297142 gcaacaatattctccatccatcaaattttgagtca 20297108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42331549 - 42331593
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| ||| ||||||||||  |||||||||||||||    
T  42331549 gcaacaatattcttcattcatcaaattttaagtcatactacaaca 42331593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43254033 - 43254069
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcata 37  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  43254033 gcaacaatattctccatccatcaaattttgagacata 43254069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 56030233 - 56030186
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaata 48  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  56030233 gcaacaatattctccatccatcaaattttgagtcatactacaacaata 56030186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47211264 - 47211314
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaataata 51  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47211264 gcaacaatattctccatccatcaaattttaagtcatactacaacaataata 47211314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17662782 - 17662827
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  17662782 gcaacaatattctccatccatcaaatttgtagtcatactacaacaa 17662827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24348003 - 24347958
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  24348003 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 24347958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5100787 - 5100743
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  5100787 gcaacaatattctccatccatcaaattttgagtcatactacaaca 5100743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22135175 - 22135219
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  22135175 gcaacaatattctccatccatcaaattttgagtcatactacaaca 22135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44600384 - 44600430
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaat 47  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  44600384 gcaacaatattctccatccatcaatttttgagtcatactacaacaat 44600430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38890657 - 38890702
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  38890657 gcaacaatattctccatccatcaaattttgagtcatgctacaacaa 38890702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14787977 - 14788021
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  14787977 gcaacattattctccatccatcaaattttgagtcatactacaaca 14788021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22132943 - 22132987
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  22132943 gcaacaatattctccatccatcaaattttgaatcatactacaaca 22132987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 19322447 - 19322410
Alignment:
Q  6 aatattctccatccatcaaatttggagtcatactacaa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19322447 aatattctccatccatcaaattttgagtcatactacaa 19322410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14789527 - 14789571
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||    
T  14789527 gcaacattattcttcatccatcaaattttgagtcatactacaaca 14789571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25533151 - 25533101
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaataata 51  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  25533151 gcaacaatattctccatccatcaaattttgagtcatactacaacactaata 25533101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1313126 - 1313081
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  1313126 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 1313081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 746466 - 746422
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  746466 gcaacaatattctccatccatcaaattttgagtcatactacaaca 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10622083 - 10622127
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  10622083 gcaacaatattctccatccatcaaattttgagtcatactacaaca 10622127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41848848 - 41848804
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  41848848 gcaacaatattctccatccatcaaattttgagtcatactacaaca 41848804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 42991996 - 42991953
Alignment:
Q  2 caacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  42991996 caacaatattctccatccatcaaattttgagtcatactacaaca 42991953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 53918206 - 53918253
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaata 48  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  53918206 gcaacaatattctccatccatcaaattttgagtcatactataacaata 53918253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 455617 - 455571
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaat 47  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  455617 gcaacaatattccccatccatcaaattttgagtcatactacaacaat 455571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42989996 - 42989954
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaa 43  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  42989996 gcaacaatattctccatccatcaaattttgagtcatactacaa 42989954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 457994 - 457950
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||    
T  457994 gcaacaatattccccatccatcaaattttgagtcatactacaaca 457950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6561657 - 6561613
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  6561657 gcaacaatattcttcatccatcaaatttcgagtcatactacaaca 6561613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51943086 - 51943042
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  51943086 gcaacaatattcttcatccatcaaattttgagtcatactacaaca 51943042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 53916038 - 53916082
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  53916038 gcaacaatattctccatccctcaaattttgagtcatactacaaca 53916082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4104439 - 4104485
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaat 47  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||||    
T  4104439 gcaacaatattcttcttccatcaaattttgagtcatactacaacaat 4104485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 27000123 - 27000082
Alignment:
Q  5 caatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  27000123 caatattctccatccatcaaattttcagtcatactacaacaa 27000082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27636168 - 27636212
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||||||||||||||||||  | |||||||||||||    
T  27636168 gcaacaatattctccatccatcaaattttaaatcatactacaaca 27636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17325183 - 17325228
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  17325183 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 17325228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24325391 - 24325346
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  24325391 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 24325346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28998800 - 28998845
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  28998800 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 28998845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29004516 - 29004561
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  29004516 gcaacaatattctccatccatcaaattttgagtcatactacaacaa 29004561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4131838 - 4131882
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  4131838 gcaacaatattctccatccatcaaattttgagtcatactacaaca 4131882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9459969 - 9460013
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  9459969 gcaacaatattctccatccatcaaattttgagtcatactacaaca 9460013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9463796 - 9463840
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  9463796 gcaacaatattctccatccatcaaattttgagtcatactacaaca 9463840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27337488 - 27337532
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  27337488 gcaacaatattccccatccatcaaatttggagtcatactacaaca 27337532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27339686 - 27339730
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  27339686 gcaacaatattctccatccgtcaaatttggagtcatactacaaca 27339730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39931806 - 39931762
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  39931806 gcaacaatattctccatccatcaaattttgagtcatactacaaca 39931762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46432592 - 46432636
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  46432592 gcaacaatattctccatccatcaaattttgagtcatactacaaca 46432636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47906000 - 47905956
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  47906000 gcaacaatattctccatccatcaaattttgagtcatactacaaca 47905956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48664896 - 48664852
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  48664896 gcaacaatattctccatccatcaaattttgagtcatactacaaca 48664852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31736071 - 31736115
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  31736071 gcaacaatattctccttccatcaaattttgagtcatactacaaca 31736115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15295395 - 15295441
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaat 47  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||||    
T  15295395 gcaacaatattcttcttccatcaaattttgagtcatactacaacaat 15295441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6997258 - 6997214
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||    
T  6997258 gcaataatattctccatccatcaaattttgagtcatactataaca 6997214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45693980 - 45694024
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| || ||||| |||||||    
T  45693980 gcaacaatattctccatccatcaaattttgaatcatagtacaaca 45694024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 6997388 - 6997427
Alignment:
Q  6 aatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  6997388 aatattctccatccatcatattttgagtcatactacaaca 6997427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2949771 - 2949816
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||| ||||||| |||||| ||||||||||| |||||    
T  2949771 gcaacaatattcttcatccatgaaattttgagtcatactataacaa 2949816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6115673 - 6115718
Alignment:
Q  1 gcaacaatattctccatccatcaaa-tttggagtcatactacaaca 45  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  6115673 gcaacaatattctccatccatcaaatttttgagtcatcctacaaca 6115718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51 - 95
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  51 gcaacaatattctccatccatcaaattttgagtcatactacaaca 95  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15551969 - 15551925
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  15551969 gcaacaatattctccatccatcaaattttgagtcatactacaaca 15551925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18466455 - 18466411
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  18466455 gcaacaatattctccatccatcaaattttgagtcatactacaaca 18466411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25803751 - 25803707
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  25803751 gcaacaatattctccatccatcaaattttgagtcatactacaaca 25803707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26097465 - 26097421
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  26097465 gcaacaatattctccatccatcaaattttgagtcatactacaaca 26097421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27912263 - 27912219
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  27912263 gcaacaatattctccatccatcaaattttgagtcatactacaaca 27912219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18596370 - 18596323
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaata 48  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  18596370 gcaacaatattctccatccatcaaattttgagtcatagtacaacaata 18596323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21288573 - 21288527
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaat 47  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||    
T  21288573 gcaacaatattctccatccatcaaattttgagttatactacaacaat 21288527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15143264 - 15143219
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  15143264 gcaacaatattctccatccatcaaattttgagtcatactataacaa 15143219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18509863 - 18509904
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactaca 42  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  18509863 gcaacaatattctccatccatcaaattttgagtcatactaca 18509904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3373586 - 3373630
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  3373586 gcaacaatattctccatccatcaaattctgagtcatactacaaca 3373630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18468742 - 18468698
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  18468742 gcaaaaatattctccatccatcaaattttgagtcatactacaaca 18468698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18511758 - 18511806
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaataa 49  Q
    ||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  18511758 gcaacaatattcttcatccatcaaattttgagtcatactacaaaaataa 18511806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26098797 - 26098841
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  26098797 gcaataatattctccatccatcaaattttgagtcatactacaaca 26098841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27910179 - 27910135
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  27910179 gcaataatattctccatccatcaaattttgagtcatactacaaca 27910135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6661989 - 6662034
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||| |||||||||| |||  ||||||||||||||||    
T  6661989 gcaacaatattcttcatccatcaagttttaagtcatactacaacaa 6662034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17415856 - 17415893
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatac 38  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  17415856 gcaacaatattcttcatccatcaaattttgagtcatac 17415893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40221326 - 40221282
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| |||| || |||||| ||||||||||||||||    
T  40221326 gcaacaatattcttcatcaattaaattttgagtcatactacaaca 40221282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23452785 - 23452829
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  23452785 gcaacaatattctccatccatcaaattttgagtcatactacaaca 23452829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42924050 - 42924094
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  42924050 gcaacaatattctccatccatcaaattttgagtcatactacaaca 42924094  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35218521 - 35218566
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||    
T  35218521 gcaacaatattcttcatccatcaaattttgagtcatactacaacaa 35218566  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42452493 - 42452440
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaataatacta 54  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||    
T  42452493 gcaacaatattcttcatccatcaaattttaagtcatactacaacaatcatacta 42452440  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 27136465 - 27136509
Alignment:
Q  5 caatattctccatccatcaaatttggagtcatactacaacaataa 49  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  27136465 caatattcttcatccatcaaattttgagtcatactacaacaataa 27136509  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35216140 - 35216184
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  35216140 gcaacaatattcttcatccatcaaattttgagtcatactacaaca 35216184  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27583863 - 27583907
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||    
T  27583863 gcaacaatattcttcatccatcaaaatttgagtcatactacaaca 27583907  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34575659 - 34575696
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatac 38  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  34575659 gcaacaatattcttcatccatcaaattttgagtcatac 34575696  T

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Target: scaffold0468 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2141 - 2184
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaac 44  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  2141 gcaacaatattctccatccatcaaattttgagtcatactacaac 2184  T

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Target: scaffold0154 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12017 - 12062
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    
T  12017 gcaacaatattctccatccatcaaattttgaatcatactacaacaa 12062  T

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Target: scaffold0031 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 78927 - 78883
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  78927 gcaacaatattctccatccatcaaattttaagtcatactacaaca 78883  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51753 - 51709
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  51753 gcaacattattctccatccatcaaattttgagtcatactacaaca 51709  T

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Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50203 - 50159
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||    
T  50203 gcaacattattcttcatccatcaaattttgagtcatactacaaca 50159  T

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Target: scaffold0511 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1779 - 1734
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaacaa 46  Q
    ||||||||||||| | ||| |||||||| |||||||||||||||||    
T  1779 gcaacaatattcttcttccttcaaattttgagtcatactacaacaa 1734  T

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Target: scaffold0133 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4590 - 4546
Alignment:
Q  1 gcaacaatattctccatccatcaaatttggagtcatactacaaca 45  Q
    ||||||||||||| |||||||||||||| |||| ||||| |||||    
T  4590 gcaacaatattcttcatccatcaaattttgagttatactgcaaca 4546  T

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