View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15996_low_4 (Length: 407)
Name: NF15996_low_4
Description: NF15996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15996_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 185 - 406
Target Start/End: Complemental strand, 45973495 - 45973271
Alignment:
| Q |
185 |
ctcaaagaacccctcactggtaaattgttaaattgtaatggaaaacaatgtaatgaattggaatcctt-atggataaaacgcatcaattaggcaaaggtt |
283 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45973495 |
ctcaaagaacccctcactggtaaattgataaattgtaatggaaaacaatgtaatgaattggaatccttgatggataaaacgcatcaattaggcaaaggtt |
45973396 |
T |
|
| Q |
284 |
tccaatttttctcaacctgaacgatgcgcttaagctcatgggtttttccttgttgaatatattgtgctgcgggtgtaaagtgaaaagattagagat--gg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
45973395 |
tccaatttttctcaacctgaacgatgcgcttaagctcatgggttttcccttgttgaatatattgtgttgcgggtgtaaagtgaaaagattagagatgggg |
45973296 |
T |
|
| Q |
382 |
aatctacactgttgattttattgga |
406 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
45973295 |
aatctacactgttgatttgattgga |
45973271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 45973674 - 45973521
Alignment:
| Q |
18 |
tttacgacaaagatcgaaaatggtaaagggcatgtgttgtttcgtagttgaggcaacctgcgatggtgctcagacgagttttgtcggagtcgacaaggag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45973674 |
tttacgacaaagatcgaaaatggtaaagggcatgtgttgtttcgtagttgaggcaacctgcgatggtgctcagacgagttttgtcggagtcgacaaggag |
45973575 |
T |
|
| Q |
118 |
acacgcggcggtgtatactgtgactcttatccaccctccatcaactctgattac |
171 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45973574 |
acacacggcggtgtatactgtgactcttatccaccctccatcaactctgattac |
45973521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University