View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15996_low_8 (Length: 331)
Name: NF15996_low_8
Description: NF15996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15996_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 42073782 - 42073476
Alignment:
| Q |
10 |
catcatcaaattttctccatttccatcaaatggtattccaagtttctcatcacaaagtggagattcttttgcttgcattgcttgtttcaacgctttcttc |
109 |
Q |
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| T |
42073782 |
catcatcaaattttctccatttccatcaaatggtattccaagtttctcatcacaaagtggagattcttttgcttgcattgcttgtttcaacgctttcttc |
42073683 |
T |
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| Q |
110 |
aactcttcacagtaaccttccaaatactctagcttttgtttcagctcaccaaatgaagatctcatctcagaaacttcaattatagcagaatctctactct |
209 |
Q |
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| T |
42073682 |
aactcttcacagtaaccttccaaatactcaagcttttgtttcagctcaccaaatgaagatctcatctcagaaacttcaattatagcagaatctctactct |
42073583 |
T |
|
| Q |
210 |
catgagcttccataagctctctttttagcatctcaattgacataattcccatgtctttattaagaatctgagaaacttcctcagattctgttctatttgg |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42073582 |
catgagcttccataagctctcttttaagcatctcaattgacataattcccatgtctttattaagaatctgagaaacttcctcagattctgttctatttgg |
42073483 |
T |
|
| Q |
310 |
tgaaaaa |
316 |
Q |
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||||||| |
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| T |
42073482 |
tgaaaaa |
42073476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 24876657 - 24876566
Alignment:
| Q |
95 |
ttcaacgctttcttcaactcttcacagtaaccttccaaatactctagcttttgtttcagctcaccaaatgaagatctcatctcagaaacttc |
186 |
Q |
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||||| |||||||||| ||||||||||||| ||||| ||||| | ||| ||| ||| ||| || |||||| ||| ||||||||||||||| |
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| T |
24876657 |
ttcaaagctttcttcagctcttcacagtaattctccaagtactccatcttctgtctcaactctcccaatgaacatcgcatctcagaaacttc |
24876566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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