View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15997_high_1 (Length: 595)
Name: NF15997_high_1
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 56 - 587
Target Start/End: Complemental strand, 7414991 - 7414447
Alignment:
| Q |
56 |
gtaaaattgcatacatttatctctaccctggtcatcaaaatcttctccnnnnnnnntaaaatctcacaccttcataaagccctttacaaata-------- |
147 |
Q |
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| T |
7414991 |
gtaaaattgcaaccatttatctctaccctggtcatcaaaatcttctccaaaaaaattaaaatctcagaccttcataaagccctttacaaatatttctctg |
7414892 |
T |
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| Q |
148 |
--ctacttgattttgaatacttgatcacaatgaacatgatcttgacatggcgtcctagttggttatcannnnnnnnnnnnnnnnncaagatatcattgtc |
245 |
Q |
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| T |
7414891 |
tactatttgattttgaatacttgatcacaatgaacatgatcttgacatggcgtcctagttggttatcaaataataataataataacaagatatcattgtc |
7414792 |
T |
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| Q |
246 |
aaaatgaaatactgataacaa---tagcatatgaaatgcttactttatttaggaattgttttgatgattaatacaaaagaagttattcttgtaacacact |
342 |
Q |
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| T |
7414791 |
aaaatgaaatactgataacaacaatagcatatgaaatgcttactttatttaggaattgttttgatgattaatacaaaagaagttattcttgtaacacact |
7414692 |
T |
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| Q |
343 |
agctagggtttttgcatataaatagtaacctcttagggctaagataagacttatgtctaatcaaatgccacagtcatacaaatgtatattccttttcttt |
442 |
Q |
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| T |
7414691 |
agctagggtttttgcatataaatagtaacctcttagggctaagataagacttatgtctaatcaaatgccacagtcatacaaatgtatattccttttcttt |
7414592 |
T |
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| Q |
443 |
ttccggtgctcaaatcaaatcccgtgttcccaaaatatagatccatatgccagcgacattttattcccttaattatcggtacacacagttcgagacatca |
542 |
Q |
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| T |
7414591 |
ttccggtgctcaaatcaaatcccgtgttcccaaaatatagatccatatgccagcgacattttattcccttaattatcggtacacacagttcgagacatca |
7414492 |
T |
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| Q |
543 |
tttgggttgtccaaatatactttactcctccgttgcttttcattt |
587 |
Q |
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| T |
7414491 |
tttgggttgtccaaatatactttactcctccgttccttttcattt |
7414447 |
T |
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