View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15997_high_4 (Length: 381)
Name: NF15997_high_4
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 47421381 - 47421018
Alignment:
| Q |
1 |
ttatcatctctcagaccacaggatgtggaaatgttccaagatccattgaatagagacacaggcggaaatgcttcaaattctcagcttcctgattcagatg |
100 |
Q |
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| T |
47421381 |
ttatcatctctcagaccacaggatgtggaaatgttccaagatccattgaatagagacacaggcggaaatgcttcaaattctcagcttcctgattcagatg |
47421282 |
T |
|
| Q |
101 |
caggtattcactgatttacgttatatttgtgatcttgctatcatatttgtacattgttcattagattcattctttttgagagataaggggttgtgtgttt |
200 |
Q |
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| T |
47421281 |
caggtattcactgatttacgttatatttgagctcttgctatcatatttgtacattgttcattagattcattctttttgacagataaggggttgtgtgttt |
47421182 |
T |
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| Q |
201 |
aactccctcccagtagtattgctaacaattgattaccaacatttgctattaaaagaaaagggctattaaatctgtatcgattgcgtttgaatctgtttct |
300 |
Q |
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| T |
47421181 |
aactccctcccagtagtattgctaacaattgattaccaacatttgctattaaaagaaaagggctattgaatctgtatcgattgcgtttgaatctgtttct |
47421082 |
T |
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| Q |
301 |
ttcaagattgttgcatgaaacgtgagatattgacaacactgcactcaacaactaagtttcacat |
364 |
Q |
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| T |
47421081 |
ttcaagattgttgcatgaaacgtgagatattgacaacactgcactcaacaactaagtttcacat |
47421018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 47391953 - 47391890
Alignment:
| Q |
44 |
cattgaatagagacacaggcggaaatgcttcaaattctcagcttcctgattcagatgcaggtat |
107 |
Q |
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| T |
47391953 |
cattgaatcgagacattggcggagatgcttctaattctcacctttctgattctgatgcaggtat |
47391890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 47422241 - 47422179
Alignment:
| Q |
20 |
aggatgtggaaatgttccaagatccattgaatagagacacaggcggaaatgcttcaaattctc |
82 |
Q |
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||||||||||||||||||||| |||||||||| ||| | || |||| ||||||| ||||||| |
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| T |
47422241 |
aggatgtggaaatgttccaagctccattgaatcaagaaatagtcggagatgcttctaattctc |
47422179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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