View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15997_high_6 (Length: 310)
Name: NF15997_high_6
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 14499825 - 14499537
Alignment:
| Q |
1 |
ttcataattgatagtattagttacatatccattttttaatttaattaaagcaccaactaataaaattctttagttgaaaaaatatatcatgatcaataat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
14499825 |
ttcataattgatcgtattagttacatatccattttttaatttaattaaagcaccaactaataaaattctttagttgaaaaaatatatcatcatcaacaat |
14499726 |
T |
|
| Q |
101 |
tgcaaaaagcacatcattaaattatgctgcaaaaagaacaaatggttgctttatcatgataaccattcgaatatga-nnnnnnnggataaaattacaaca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14499725 |
tgcaaaaagcacatcattaaattatgctgcaaaaagaacaaatggttgctttatcatgataaccattcgaatatgattttttttggataaaattacaaca |
14499626 |
T |
|
| Q |
200 |
aaagtcatttttcttaatttgtttttataaatctagtcatttacnnnnnnncgtaccagattattcatatatgtgtaatagtttgaaca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14499625 |
aaagtcatttttcttaatttgtttttataaatctagtcatttacttttttttgtaccagattattcatatatgtgtaatagtttgaaca |
14499537 |
T |
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