View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15997_low_2 (Length: 537)
Name: NF15997_low_2
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_low_2 |
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| [»] chr4 (4 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 77 - 537
Target Start/End: Complemental strand, 5287721 - 5287261
Alignment:
| Q |
77 |
taaacagtacccccaatgcataagtcaaagattaatcattcgagaaaattaaaattcaatcaaggaattgatctcacccaacatatattttactctatgt |
176 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5287721 |
taaacagtaccgccaatgcataagtcaaagattaatcattcgagaaaattaaaattcaatcaaggaattgatctcacccaacatatattttactctatgc |
5287622 |
T |
|
| Q |
177 |
gctggtcgaagatcaaaccctgaataaaatggttaaataacccaatcatataccacttgtgccacactgtgttggtctaaacttatcttaatttcattca |
276 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5287621 |
gctagtcgaagatcaaaccctgaataaaatggttaaataacccaatcatataccacttgtgccacactgtgttggtctaaacttatcttaatttcattcg |
5287522 |
T |
|
| Q |
277 |
gcccaaaacattttcaattataaattaccattacgagaataggttgtaaattcaatgtcaagtgaacacggtaatgcaattaaaaatggtcttgactttg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
5287521 |
gcccaaaacattttcaattataaattaccattacgagaataggttgtaaattcaatgtcaagtgaacacggtaatgcaattaaatatggtcttgacttcg |
5287422 |
T |
|
| Q |
377 |
gtttggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaatattaatgacggtaaagatcaaatgcaaacaactataatgtttc |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5287421 |
gtttggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaatattaatgacggtaaagatcaaatgcaaacaactataatatttc |
5287322 |
T |
|
| Q |
477 |
attcatataaatagcaagcaaatacatgcaagaaaactcaattctcataagttatttacat |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5287321 |
attcatataaatagcaagcaaatacatgcaagaaaactcaattctcataagttatttacat |
5287261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 239 - 537
Target Start/End: Complemental strand, 5279572 - 5279257
Alignment:
| Q |
239 |
cacactgtgttggtctaaacttatcttaatttcattcagcccaaaacattttcaattataaa-ttaccattacgagaataggttgtaaattcaatgtcaa |
337 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5279572 |
cacacagtgttggtctaaacttatcttaatttcattttgcccaaaatattttca-ttataaaattaccattacgagaataggttgtaaattcaatgtcaa |
5279474 |
T |
|
| Q |
338 |
gtgaacacggtaatgcaattaaaaatggtcttgactttggtttggagatcaagtatacatgtagttgttaaagaatggttcattaattaat--------- |
428 |
Q |
| |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5279473 |
gtggacacggccatgcaattaaaaatggtcttgactttggtttggagatcaagtatacatgtagttgttaaagaatggttcattatttaatatgaaaaaa |
5279374 |
T |
|
| Q |
429 |
-------aaaatattaatgacggtaaagatcaaatgcaaacaactataatgtttcattcatataaatagcaagcaaatacatgcaagaaaactcaat--t |
519 |
Q |
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|||| | ||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| |||||||||| | |
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| T |
5279373 |
aaaaaaaaaaaaactaatgacggtaaatatcaaatgcaaaccacttcaatgtttcattgttataaatagcaagc-aatacatgcaacaaaactcaattct |
5279275 |
T |
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| Q |
520 |
ctcataagttatttacat |
537 |
Q |
| |
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|||| ||||||||||||| |
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| T |
5279274 |
ctcacaagttatttacat |
5279257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 356 - 537
Target Start/End: Original strand, 5281650 - 5281831
Alignment:
| Q |
356 |
ttaaaaatggtcttgactttggtttggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaatattaatgacggtaaagatcaaa |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||| |||||| |
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| T |
5281650 |
ttaaaaatggtcttgactttggtttggagatcaagcaaacatgtagttgttaaagaatggttcattatttaataaaaaactaatgacagtaaatatcaaa |
5281749 |
T |
|
| Q |
456 |
tgcaaaca-actataatgtttcattcatataaatagcaagcaaatacatgcaagaaaactcaattctcataagttatttacat |
537 |
Q |
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|||||| | || |||||||||||| |||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||| |
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| T |
5281750 |
tgcaaaaatacatcaatgtttcattcttataaatagcaagc-aatatatgcaacaaaactcaattctcaaaagttatttacat |
5281831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 5281502 - 5281603
Alignment:
| Q |
183 |
cgaagatcaaaccctgaataaaatggttaaataacccaatcatataccacttgtgccacactgtgttggtctaaacttatcttaatttcattcagcccaa |
282 |
Q |
| |
|
|||||||| |||||| || ||| ||||||||| | || |||||||||||||| || | | |||||||||||||||| ||| |||||||| ||||||| |
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| T |
5281502 |
cgaagatcgaaccctaaacaaattggttaaatgttcgaaatatataccacttgtgtcatattatgttggtctaaacttaacttcatttcatttagcccaa |
5281601 |
T |
|
| Q |
283 |
aa |
284 |
Q |
| |
|
|| |
|
|
| T |
5281602 |
aa |
5281603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 40 - 537
Target Start/End: Complemental strand, 20359153 - 20358654
Alignment:
| Q |
40 |
ctaagaaaaagtctaaatttatcctctcnnnnnnnngtaaacagtacccccaatgcataagtcaaagattaatcattcgagaaaattaaaattcaatcaa |
139 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
20359153 |
ctaagaaaaagtctaaatttatcctcttttttttttgtaaacagtacccccaatgcataagtcaacgactaatcattcgagaaaattaaaattcaatcaa |
20359054 |
T |
|
| Q |
140 |
ggaattgatctcacccaacatatattttactctatgtgctggtcgaagatcaaaccctgaataaaatggttaaataacccaatcatataccacttgtgcc |
239 |
Q |
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||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20359053 |
ggaattgatctcacccagcatatattttactctatgtgctagccgaagatcaaaccctgaataaaatggttaaataacccaatcatataccacttgtgcc |
20358954 |
T |
|
| Q |
240 |
acactgtgttggtctaaacttatcttaatttcattcagcccaaaacattttcaattataaattaccattacgagaataggttgtaaattcaatgtcaagt |
339 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20358953 |
acactgtgttggtctaaacttatcttaatttcattcagcccaaaacattttaaattataaattaccattacgagaataggttgtaaattcaatgtcaagt |
20358854 |
T |
|
| Q |
340 |
gaacacggtaatgcaattaaaaatggtcttgactttggttt--ggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaatatta |
437 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20358853 |
gaacacggtaatgcaattaaatatggtcttgactttggtttggggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaatatta |
20358754 |
T |
|
| Q |
438 |
atgacggtaaagatcaaatgcaaacaactataatgtttcattcatataaatagcaagcaaatacatgcaagaaaactcaattctcataagttatttacat |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20358753 |
atgacggtaaagatcaaatgcaaacaactataatatttcattcatataaatagcaagcaaatacatgcaagaaaactcaattctcataagttatttacat |
20358654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 356 - 537
Target Start/End: Original strand, 20353048 - 20353231
Alignment:
| Q |
356 |
ttaaaaatggtcttgactttggtttggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaatattaatgacggtaaagatcaaa |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||| |
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|
| T |
20353048 |
ttaaaaatggtcttgactttggtttggagatcaagcaaacatgtagttgttaaagaatggttcattatttaataaaaaactaatgacggtaaatatcaaa |
20353147 |
T |
|
| Q |
456 |
tgcaaaca-actataatgtttcattcatataaatagcaagcaaatacatgcaagaaaactcaattctcataag-ttatttacat |
537 |
Q |
| |
|
|||||| | || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| |
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|
| T |
20353148 |
tgcaaaaatacatcaatgtttcattcttataaatagcaagcaaatacatgcaacaaaactcaattctcacaagtttatttacat |
20353231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 20352940 - 20353001
Alignment:
| Q |
223 |
catataccacttgtgccacactgtgttggtctaaacttatcttaatttcattcagcccaaaa |
284 |
Q |
| |
|
||||||||||||| | || | |||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
20352940 |
catataccacttgagtcatattgtgttggtctaaacttaacttaatttcatttagcccaaaa |
20353001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 356 - 537
Target Start/End: Complemental strand, 6236423 - 6236243
Alignment:
| Q |
356 |
ttaaaaatggtcttgactttggtttggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaatattaatgacggtaaagatcaaa |
455 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||| |
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|
| T |
6236423 |
ttaaaaatggttttgactttagtatggagatcaagtacacatgtagttgttaaagaatggttcattatttaataaaaaactaatgacggtaaatatcaaa |
6236324 |
T |
|
| Q |
456 |
tgcaaacaactataatgtttcattcatataaatagcaagcaaatacatgcaagaaaactcaattctcataagttatttacat |
537 |
Q |
| |
|
||||||| ||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
6236323 |
tgcaaaccacttcaatgtttcattcttataaatagcaagc-aatacatgcaacaaaactcaattctcaccggttatttacat |
6236243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 6236574 - 6236466
Alignment:
| Q |
180 |
ggtcgaagatcaaaccctgaataaaatggttaaataacccaatcatataccacttgtgccacactgtgttggtctaaacttatcttaatttcattcagcc |
279 |
Q |
| |
|
|||| |||||| |||||| || ||| ||||||||| | | || ||||||||||||||| ||| |||||||||||||||||||||||||||||| || | |
|
|
| T |
6236574 |
ggtcaaagatcgaaccctaaacaaattggttaaatgatcgaaacatataccacttgtgtgacatcgtgttggtctaaacttatcttaatttcatttagtc |
6236475 |
T |
|
| Q |
280 |
caaaacatt |
288 |
Q |
| |
|
||||||||| |
|
|
| T |
6236474 |
caaaacatt |
6236466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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