View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15997_low_3 (Length: 462)
Name: NF15997_low_3
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_low_3 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 40185250 - 40184806
Alignment:
| Q |
1 |
ttcagctgagagtctgaaggcccagactcagatgaccgctacttgatccctattttaattattttcttagtatctatctcgtctttcatcatccagttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185250 |
ttcagctgagagtctgaaggcccagactcagatgaccgctacttgatccctattttagttattttcttagtatctatctcgtctttcatcatccagttta |
40185151 |
T |
|
| Q |
101 |
ataacttttatcaagctgttaggtggatttgtctttgcatttggaaaaccatcagtacatagtatatgatgtcacagttaactttattc---ttgaattg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
40185150 |
ataacttttatcaagctgttaggtggatttgtctttgcatttggaaaaccatcagtacatagtatatgatgt--cagttaactttattcttgttgaattg |
40185053 |
T |
|
| Q |
198 |
gtaagaagtttcatgtatgaccagtaatgttatcattgataagtattttaaaaaagatgtacacaatcgagattttatgtttatgtaacgaataagcagc |
297 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185052 |
gtaagaagttttatgtatgaccagtaatgttatcattgataagtattttaaaaaagatgtacacaatcgagattttatgtttatgtaacgaataagcagc |
40184953 |
T |
|
| Q |
298 |
tgtttctacatccatatgaaaaatatgctggctagctagtatttacctcattggaataaatatgttgttattggagtcattctcaaaacatctgggatct |
397 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40184952 |
tgtttctacatccatatgaaaaatatgctg----gctagtatttaccacattggaataaatatgttgttattggagtcattctcaaaacatgtgggatct |
40184857 |
T |
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| Q |
398 |
ctttcataccttgttcaagtttagtgtctttaataaattctcgtgattaat |
448 |
Q |
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| T |
40184856 |
ctttcataccttgttcaagtttagtgtctttaataaattctcgtgattaat |
40184806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 22099 - 22175
Alignment:
| Q |
98 |
ttaataacttttatcaagctgttaggtggatttgtctttgcatttggaaaaccatcagtacatagtatatgatgtca |
174 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||| ||||| |
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| T |
22099 |
ttaataacttttgtcaagctgttaggtggatttgtctttgcacttggaaaaccattaggacataatatatggtgtca |
22175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 43436601 - 43436708
Alignment:
| Q |
62 |
ttttcttagtatctatctcgtctttcatcatccagtttaataacttttatcaagctgttaggtggatttgtctttgcatttggaaaaccatcagtacata |
161 |
Q |
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| T |
43436601 |
ttttcttagtatctatctcatctttaatcaacc-----aataacttttgtcaagctgttgggtggatttttctttgcacttggaaaaccattaggagata |
43436695 |
T |
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| Q |
162 |
gtatatgatgtca |
174 |
Q |
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|||||| ||||| |
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| T |
43436696 |
atatatggtgtca |
43436708 |
T |
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