View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15997_low_4 (Length: 442)
Name: NF15997_low_4
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_low_4 |
 | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 19292324 - 19292748
Alignment:
| Q |
1 |
gagtttagtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggtttctaaagttgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19292324 |
gagtttagtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggtttctaaagttgcttc |
19292423 |
T |
|
| Q |
101 |
tagaagtggacttatttagatttttgtttggcttttcaagtttaaattatgatggatgtttttagcctataagctaatcttggttttagcagaacaatac |
200 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19292424 |
tagaagtggatttatctagatttttgtttggcttttcaagtttaaattgtgatggatgtttttaggctataagctaatcttggttttagcagaacaatac |
19292523 |
T |
|
| Q |
201 |
acaaatatatgtagcaactttaggctatatattctaaatttctctaaaatgttcttgaaatatgcatcaatttcaacccctccctaaggcatatttcaag |
300 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19292524 |
acaa--atatgtagcaactttaggc----tattctaaatttctctaaaatgttcttgaaatatgcatcaatttcaacccctccctaaggcatattccaag |
19292617 |
T |
|
| Q |
301 |
aaatcctagtatagtttctcatcactaaatcttacatttgtgaaat----tatctccatgcattgatgtcaataggtatcataattaatctttaaaattc |
396 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19292618 |
aaatcctagtatagtttctcatcgcaaaatcttacatttgtgaaattatatatctccatgcattgatctcaataggtatcataattaatctttaaaattc |
19292717 |
T |
|
| Q |
397 |
tacatcctcctcttgtgacaatagatgatgt |
427 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |
|
|
| T |
19292718 |
tacatccacctcttgtgacaatagttgatgt |
19292748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 33798857 - 33798907
Alignment:
| Q |
33 |
ttacatatcaaaggtttgaatacaattgcacacatgtttgtctatttatag |
83 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
33798857 |
ttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatag |
33798907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 6389 - 6313
Alignment:
| Q |
8 |
gtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggt |
85 |
Q |
| |
|
||||||| |||||||||||| | |||| ||| ||||||| |||||||||||| ||| ||| | |||||||||||||| |
|
|
| T |
6389 |
gtgaagccttcaatattatt-gacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggt |
6313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 51246731 - 51246655
Alignment:
| Q |
8 |
gtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggt |
85 |
Q |
| |
|
||||||| |||||||||||| | |||||||| |||||| |||||||||||||||| ||| | ||||| |||||||| |
|
|
| T |
51246731 |
gtgaagccttcaatattatt-gacattacatcccaaaggcttgaatacaattgcacccatataagtctacttataggt |
51246655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University