View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15997_low_5 (Length: 391)
Name: NF15997_low_5
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 30723270 - 30723652
Alignment:
| Q |
1 |
cttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgattgtgt |
100 |
Q |
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| T |
30723270 |
cttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgatagtat |
30723369 |
T |
|
| Q |
101 |
gttctttaaacacaagaagaagaaatcaggtggaaaacggtactttataaactttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagt |
200 |
Q |
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| T |
30723370 |
gttctttaaacacaagaagaagaaatcaggtggaaaacggtactttataaactttgtcaatagagcacttcatcttactaaaagtaacactgctgaaagt |
30723469 |
T |
|
| Q |
201 |
ttttctcttgttatcactaacaagtatgatatttcccttctaaatacatggatctctggcatcttgaaacgaaatgt-aaaaagctttctatcactacat |
299 |
Q |
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| T |
30723470 |
ttttctcttgttatcactaacaagtatgatatttcccttctaaatacatggatctctggcatcttgaaacgaaatgtaaaaaagctttctatcactacat |
30723569 |
T |
|
| Q |
300 |
atttagagctacccttctctgcttatacatcacatattctttttaattactcttatatgttagaagaattggtgcttgagatg |
382 |
Q |
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| T |
30723570 |
atttagagctacccttctctgcttatacatcacatattctttttaattactcttataagttagaagaattggttcttgagatg |
30723652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 30715694 - 30715807
Alignment:
| Q |
117 |
aagaagaaatcaggtggaaaacggtactttataaactttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatca |
216 |
Q |
| |
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| T |
30715694 |
aagaaaaaatcaggtggaaaacaacactttataaactttgtcaatagagcacttctgcttaatgagaattatagtgtggaatgtttttctcttgtgatca |
30715793 |
T |
|
| Q |
217 |
ctaacaagtatgat |
230 |
Q |
| |
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|||| ||||||||| |
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| T |
30715794 |
ctaataagtatgat |
30715807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 9678534 - 9678650
Alignment:
| Q |
153 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
252 |
Q |
| |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
9678534 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
9678633 |
T |
|
| Q |
253 |
tctctggcatcttgaaa |
269 |
Q |
| |
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||||| |||| |||||| |
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| T |
9678634 |
tctcttgcatgttgaaa |
9678650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 13543478 - 13543594
Alignment:
| Q |
153 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
252 |
Q |
| |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
13543478 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
13543577 |
T |
|
| Q |
253 |
tctctggcatcttgaaa |
269 |
Q |
| |
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||||| |||| |||||| |
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| T |
13543578 |
tctcttgcatgttgaaa |
13543594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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