View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15997_low_7 (Length: 355)
Name: NF15997_low_7
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 42283118 - 42283438
Alignment:
| Q |
17 |
aatatattgtgtatatacgtgttaaagttaaaatttgacttctcattgcttaagataaattagtagtgacgtagtattaataagaactagtatatatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42283118 |
aatatattgtgtatatacgtgttaaagttaaaatttgacttctcattgcttaagataaattagtagtgacgtagtattaataagaactagtatatatttt |
42283217 |
T |
|
| Q |
117 |
tgaaaaggatttaactaacatgtgtaatattttccatgttaaatcaactaaaaatagtaatctgaggtggaacttatatttagaaataac-tttttcctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42283218 |
tgaaaaggatttaactaacatgtgtaatattttccatgttaaatcaactaaaaatagtaatttgaggtggaacttatatttagaaataacttttttcctt |
42283317 |
T |
|
| Q |
216 |
caaaaatagctagacagggaaaaaggtactataagaaaccagttttatgatcaaacagaaagtatgatttatgaggtcagcatatactaactcttgggtg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42283318 |
caaaaatagctagacagggaaaaaggtactataagaaaccagttttatgatcaaacagaaagtatgatttatgaggtcagcatatactaactcttgggtg |
42283417 |
T |
|
| Q |
316 |
actactaatcaactatgttat |
336 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
42283418 |
accactaatcaactatgttat |
42283438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University