View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15997_low_9 (Length: 276)
Name: NF15997_low_9
Description: NF15997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15997_low_9 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0648 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 2924 - 3168
Alignment:
| Q |
17 |
gagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2924 |
gagacatgctccgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
3023 |
T |
|
| Q |
117 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3024 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataattccattgacacttttccagacaagctattgactg-aaaggtcaatagt |
3122 |
T |
|
| Q |
217 |
tcgcctatcttgtcgcactttatacatataatcttgacctttttga |
262 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3123 |
tcgcctatctggtcgcacttcatacatataatcttgacctttttga |
3168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 11678 - 11434
Alignment:
| Q |
17 |
gagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11678 |
gagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcttctttggtattgttccagt |
11579 |
T |
|
| Q |
117 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11578 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataattccattgacacttttccagacaagctattgactg-aaaggtcaatagt |
11480 |
T |
|
| Q |
217 |
tcgcctatcttgtcgcactttatacatataatcttgacctttttga |
262 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11479 |
tcgcctatctggtcgcacttcatacatataatcttgacctttttga |
11434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 21762 - 21519
Alignment:
| Q |
17 |
gagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21762 |
gagacatgctccgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
21663 |
T |
|
| Q |
117 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21662 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataattccattgacacttttccagacaagctattgactg-aaaggtcaatagt |
21564 |
T |
|
| Q |
217 |
tcgcctatcttgtcgcactttatacatataatcttgacctttttg |
261 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
21563 |
tcgcctatctggtcgcacttcatacatataatcttgacctttttg |
21519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 2393 - 2637
Alignment:
| Q |
17 |
gagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2393 |
gagacatgctccgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
2492 |
T |
|
| Q |
117 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2493 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataattccattgacacttttccagacaagctattgactg-aaaggtcaatagt |
2591 |
T |
|
| Q |
217 |
tcgcctatcttgtcgcactttatacatataatcttgacctttttga |
262 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2592 |
tcgcctatctggccgcacttcatacatataatcttgacctttttga |
2637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 6583 - 6339
Alignment:
| Q |
17 |
gagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6583 |
gagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcatctttggtattgttccagt |
6484 |
T |
|
| Q |
117 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6483 |
aaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataattccattgacacttttccagacaagctattgactg-aaaggtcaatagt |
6385 |
T |
|
| Q |
217 |
tcgcctatcttgtcgcactttatacatataatcttgacctttttga |
262 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
6384 |
tcgcctatctggccgcacttcatacatataatcttgacctttttga |
6339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 18117146 - 18116904
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
18117146 |
agagacatgctctgaggaatttcaccacaaagcttattattagaaaaatcgagagattccatatttttcatgcctccaatcgtcttcggtatagttccaa |
18117047 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| |||||||||||||||| |||||| ||||||||| ||| || |||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
18117046 |
tgaaattattgtgagataagtttaatgtttgaactttaacaagccgaaataattccaatggcacttttccagacaagttattagctgaaaa-gtcaatag |
18116948 |
T |
|
| Q |
216 |
ttcgcctatcttgtcgcactttatacatataatcttgacctttt |
259 |
Q |
| |
|
||||||||||| || | || ||||| |||||||||||||||| |
|
|
| T |
18116947 |
ttcgcctatctggttcgatttcatacacataatcttgacctttt |
18116904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 19462370 - 19462128
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
19462370 |
agagacatgctccgaggaatttcaccacaaagcttattattagaaaaatcgagagattccatatttttcatgcctccaatcgtcttcggtatagttccaa |
19462271 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| |||||||||||||||| |||||| ||||||||| ||| || |||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
19462270 |
tgaaattattgtgagataagtttaatgtttgaactttaacaagccgaaataattccaatggcacttttccagacaagttattagctgaaaa-gtcaatag |
19462172 |
T |
|
| Q |
216 |
ttcgcctatcttgtcgcactttatacatataatcttgacctttt |
259 |
Q |
| |
|
||||||||||| || | || ||||| |||||||||||||||| |
|
|
| T |
19462171 |
ttcgcctatctggttcgatttcatacacataatcttgacctttt |
19462128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 19382071 - 19381863
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
19382071 |
agagccatgctttgaggaatttcaccaaaaaacttattattagagagatcgagagattccatatttatcatgcctccaatcgtctttggaattgttccaa |
19381972 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| || |||||||||||||||||||| ||||| ||| ||| || || || |||||||||||||||| || |||||||||||| |
|
|
| T |
19381971 |
tgaaattattgtgagataagttcaatgtttgaacttgaacaagccgaaacaattccaatggcatttctccagacaagctattgggtg-aaaggtcaatag |
19381873 |
T |
|
| Q |
216 |
ttcgcctatc |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
19381872 |
ttcgcctatc |
19381863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 18148008 - 18147798
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18148008 |
agagacatgccctgaggaatttcaccaaaaaacttgttattagagaggtcgagagatttcatatttttcatgcctccaatcgtcttcggtattgttccaa |
18147909 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||| |||| ||| ||| || || || |||||||||||||||| ||| |||||||||||| |
|
|
| T |
18147908 |
caaaattattgtgagataagtttaatgtttgaacttgaacaagctgaaacaattccaatggcaattctccagacaagctattgcctg-aaaggtcaatag |
18147810 |
T |
|
| Q |
216 |
ttcgcctatctt |
227 |
Q |
| |
|
||||||| |||| |
|
|
| T |
18147809 |
ttcgcctttctt |
18147798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 19394327 - 19394085
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||| || ||||||||||| |||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
19394327 |
agagccatgctttgaggaatttcaccataaaacttattattggaaagatcgagagattccaaatttttcatgcctccaatcgtgttcggtattgttccaa |
19394228 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| ||||||||||| |||||| ||||||||||||| ||| ||||||||| ||| || ||||| |||||||||||||||| ||| ||||||||| || |
|
|
| T |
19394227 |
tgaaattattgtgagatagatttaacgtttgaacttgaataagccgaaataattccaatggcacttctccagacaagctattggctg-aaaggtcaacag |
19394129 |
T |
|
| Q |
216 |
ttcgcctatcttgtcgcactttatacatataatcttgacctttt |
259 |
Q |
| |
|
|||||||||| | | |||| ||| |||||||||||||||||| |
|
|
| T |
19394128 |
ttcgcctatccggatggacttcataaatataatcttgacctttt |
19394085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 17951001 - 17950806
Alignment:
| Q |
28 |
tgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaatgattgt |
127 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| |||| |
|
|
| T |
17951001 |
tgaggaatttcaccaaaaaacttgttattagagaggtcgagagattccatatttttcatgcctccaatcgttttcggtattgttcccacaaaattgttgt |
17950902 |
T |
|
| Q |
128 |
gagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagttcgcctat |
224 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| ||| ||| || |||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
17950901 |
gagataagtttaatgtttgaacttgaacaagccgaaacaattccaatggcacttttccagacaagctattggctg-aaaggtcaatagttcgcctat |
17950806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 19465531 - 19465329
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
19465531 |
agagccatgctctgaggaatttcaccaaaaaacttattattagagagatcgagagattccatattaatcatgcctccaatcgtttttggaattgttccag |
19465432 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| ||| |||||||||||| || |||||||||||||||||||| ||||| ||| ||| || ||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
19465431 |
tcaaactattgtgagataagttcaatgtttgaacttgaacaagccgaaacaattccaatggcacttctccagacaagctattggctg-gaaggtcaatag |
19465333 |
T |
|
| Q |
216 |
ttcg |
219 |
Q |
| |
|
|||| |
|
|
| T |
19465332 |
ttcg |
19465329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 18017200 - 18016992
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
18017200 |
agagccatgctctgaggaatttcaccaaaaaacttattattagagagatcgagagattccatttttttcatgcctccaatcgtcttcggaattgttcctt |
18017101 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| ||| |||||||||||| ||||||| ||||||||||||||| ||||| ||| ||| || ||||| ||||| |||| |||| ||| |||||||||||| |
|
|
| T |
18017100 |
tgaaactattgtgagataagtttaatgattgaacttgaacaagccgaaacaattccaatggcacttctccagtcaagtgattggctg-aaaggtcaatag |
18017002 |
T |
|
| Q |
216 |
ttcgcctatc |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
18017001 |
ttcgcctatc |
18016992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 19425866 - 19425626
Alignment:
| Q |
18 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
19425866 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagattccatatttttcatgcctccaatcacttttggtattgttccaatc |
19425767 |
T |
|
| Q |
118 |
aaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagtt |
217 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| |||||||| | ||| ||| ||| | ||||| ||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
19425766 |
aaattattgtgagataagtttaacgtttgaagctgaacaagcctaaacaattccaaaggcacttctccagacaagctatttgctg-aaaggtcaatggtt |
19425668 |
T |
|
| Q |
218 |
cgcctatcttgtcgcactttatacatataatcttgacctttt |
259 |
Q |
| |
|
|| || | | | | ||| |||||||||||||||||||||| |
|
|
| T |
19425667 |
cgtctttttggacttactcgatacatataatcttgacctttt |
19425626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 19438136 - 19437924
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
19438136 |
agagacatgccttgaggaatttcaccaaaaaacttgttattagatagatcgagagattccatatttttcatgcctctaatcgtcttcggtattgttccaa |
19438037 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||||||||| |||| ||| ||| || ||||| |||||||||| |||| ||| |||||||||||| |
|
|
| T |
19438036 |
caaaattattgtgagataagtttaacgtttgaacttgaacaagctgaaaaaattccaatggcacttctccagacaagttattcgctg-aaaggtcaatag |
19437938 |
T |
|
| Q |
216 |
ttcgcctatcttgt |
229 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
19437937 |
ttcgcctttcttgt |
19437924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 16678379 - 16678187
Alignment:
| Q |
25 |
ctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaatgat |
124 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||| | |||| || |
|
|
| T |
16678379 |
ctctgaggaatttcaccagaaaacttattattagagaagtcgagagattccatatttttcatgccaccaatcgtctttggtatttttccactgaaattat |
16678280 |
T |
|
| Q |
125 |
tgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagttc |
218 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| ||||| ||| ||| || ||||| |||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
16678279 |
tgtgagataagtttaaggtttggacttgaacaagccgaaacaattccaatggcacttctccagacaagttattggctg-aaaggtcaatagttc |
16678187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 18872699 - 18872907
Alignment:
| Q |
15 |
cagagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
18872699 |
cagagacatgctctgaggaatttcaccacaaaacttattactagagagatcgagagattccatattgttcatgcctctaatcgtctttggaattgttcca |
18872798 |
T |
|
| Q |
115 |
gtaaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaata |
214 |
Q |
| |
|
||| ||| |||||||| ||||||||||||||||||||||| |||| ||| ||| | ||||| ||||| |||| |||| ||| ||||||||||| |
|
|
| T |
18872799 |
acgaaactattatgagataagtttaatgtttgaacttgaacaagctgaaacaattccaatagcacttctccagtcaagtgattggctg-aaaggtcaata |
18872897 |
T |
|
| Q |
215 |
gttcgcctat |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
18872898 |
gttcgcctat |
18872907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 19335188 - 19334948
Alignment:
| Q |
18 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagta |
117 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||| | |
|
|
| T |
19335188 |
agacatgctccgaggaatttcaccataaaacttattattagagagatcgagagattccatatttatcatgcctccaatcgtcttctgaattgttccaatg |
19335089 |
T |
|
| Q |
118 |
aaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagtt |
217 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||| ||||| ||| ||| || ||||| ||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
19335088 |
aaactattgtgagataagtttaatgtttgaacttgaacaagccgaaacaattccaatggcacttctccagtcaagtgattggctg-aaaggtcaatagta |
19334990 |
T |
|
| Q |
218 |
cgcctatcttgtcgcactttatacatataatcttgacctttt |
259 |
Q |
| |
|
|| ||||| || | || ||| |||||||||||||||||| |
|
|
| T |
19334989 |
cgtgtatctccacggatttgatagatataatcttgacctttt |
19334948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 18104513 - 18104282
Alignment:
| Q |
27 |
ctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaatgattg |
126 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
18104513 |
ctgaggaatttcaccaaaaaacttgttattagagaggtcgagagattccatatttttcatgcttccaatcgtcttcggtattgttccaataaaattattg |
18104414 |
T |
|
| Q |
127 |
tgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagttcgcctatct |
226 |
Q |
| |
|
|||||||| || |||||||||| ||||||||| ||||| ||| ||| || ||||| |||||||||||||| ||| ||||||||| ||||||||| ||| |
|
|
| T |
18104413 |
tgagataagttcaatgtttgaagttgaacaagccgaaacaattccaatggcacttcaccagacaagctattagctg-aaaggtcaaaagttcgcctttct |
18104315 |
T |
|
| Q |
227 |
tgtcgcactttatacatataatcttgacctttt |
259 |
Q |
| |
|
|| | | || ||| | ||||||||||||||| |
|
|
| T |
18104314 |
ggttggatttcataaacgtaatcttgacctttt |
18104282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 17726361 - 17726561
Alignment:
| Q |
18 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagta |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| || ||||| |||||||| |||| |||||||||||||||||| || || |||||||||||| | |
|
|
| T |
17726361 |
agacatgctctgaggaatttcaccagaaaaattattgttggagaggtcgagagattccaaatttttcatgcctccaattgttttcggtattgttccaatg |
17726460 |
T |
|
| Q |
118 |
aaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagtt |
217 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||| ||||||||| || || |||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17726461 |
aaattattgtgagataagtttaatgtttgaacttgaacaagccgaaataattccgatgttacttcaccagacaagctattggctg-aaaggtcaatagtt |
17726559 |
T |
|
| Q |
218 |
cg |
219 |
Q |
| |
|
|| |
|
|
| T |
17726560 |
cg |
17726561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19027590 - 19027790
Alignment:
| Q |
18 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagta |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| || ||||| |||||||| |||| |||||||||||||||||| || || |||||||||||| | |
|
|
| T |
19027590 |
agacatgctctgaggaatttcaccagaaaaattattgttggagaggtcgagagattccaaatttttcatgcctccaattgttttcggtattgttccaatg |
19027689 |
T |
|
| Q |
118 |
aaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagtt |
217 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||| ||||||||| || || |||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19027690 |
aaattattgtgagataagtttaatgtttgaacttgaacaagccgaaataattccgatgttacttcaccagacaagctattggctg-aaaggtcaatagtt |
19027788 |
T |
|
| Q |
218 |
cg |
219 |
Q |
| |
|
|| |
|
|
| T |
19027789 |
cg |
19027790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 14895212 - 14895453
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| ||||||| || ||||| |||||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
14895212 |
agagacatgctctgcggaatttcaccataaaacttattactagagaggtcaagagattccatattcttcatgcgtccaatatcttttggtattgttccaa |
14895311 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| ||||| ||||||||||||||||| ||||| ||| ||| || ||||| ||| |||||||||||| ||| |||||||||||| |
|
|
| T |
14895312 |
tcaaattattgtgagataagtttaacgtttgaacttgaacaagccgaaacaattccaatggcacttctccggacaagctattggctg-aaaggtcaatag |
14895410 |
T |
|
| Q |
216 |
ttcgcctatcttgtcgcactttatacatataatcttgaccttt |
258 |
Q |
| |
|
|||| || || | || |||| ||||| ||| ||||||||||| |
|
|
| T |
14895411 |
ttcgtctctccggacggacttgatacacatattcttgaccttt |
14895453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 17943132 - 17942927
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||| ||| |||||| |
|
|
| T |
17943132 |
agagccatgctctgaggaatttcaccaaaaaacttattattagagagatctagagattccatatttgtcatgcctccaatggtctttggaattcttccag |
17943033 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| || |||||||||||||||| ||| ||||| ||| ||| || |||| |||| | ||| ||||||| | |||||||||| | |
|
|
| T |
17943032 |
tcaaattattgtgagataagttcaatgtttgaacttgaataagccgaaacaattccaatggaacttctccaaataagttattgaccg-aaaggtcaatcg |
17942934 |
T |
|
| Q |
216 |
ttcgcct |
222 |
Q |
| |
|
||||||| |
|
|
| T |
17942933 |
ttcgcct |
17942927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 18109620 - 18109419
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||||||| | ||| |||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
18109620 |
agagacataccctggggaatttcaccaaaaaacttgttattagagaggtcgagagattccatatttttcatgcctccaatcgttttcggtattgttccca |
18109521 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| |||| ||| ||| || ||||| ||||| |||||||||| ||| |||||||||||| |
|
|
| T |
18109520 |
caaaattgttgtgagataagtttaatgtttgaacttgaacaagcagaaacaattccaatggcacttctccaggcaagctattggctg-aaaggtcaatag |
18109422 |
T |
|
| Q |
216 |
ttc |
218 |
Q |
| |
|
||| |
|
|
| T |
18109421 |
ttc |
18109419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 18166334 - 18166129
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18166334 |
agagagatgctctgaggaatttcaccataaaacttattactagagaggtcgagagattccatatttttcatgcctccaatctcttttggtattgttccga |
18166235 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| ||||| ||||||||||||||||| ||||| | | ||| || |||| |||||||||||||||| || ||| |||||||| |
|
|
| T |
18166234 |
tcaaattattgtgagataagtttaacgtttgaacttgaacaagccgaaacatttccaatggtacttctccagacaagctattgtttg-aaatgtcaatag |
18166136 |
T |
|
| Q |
216 |
ttcgcct |
222 |
Q |
| |
|
||||||| |
|
|
| T |
18166135 |
ttcgcct |
18166129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 19400907 - 19400698
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||| | ||||||||||||||| |
|
|
| T |
19400907 |
agagccatgctctgaggaatttcaccaaaaaacttattattagagagatcgagagattccatatgtttcatgtctccaaccacttttggtattgttccaa |
19400808 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| ||||| ||||||||||||||||| ||||| ||| ||| || || || ||||||||||||||| || ||||||||||| |
|
|
| T |
19400807 |
tcaaattattgtgagataagtttaacgtttgaacttgaacaagtcgaaacaattccaatggcagttccccagacaagctattggttg-aaaggtcaataa |
19400709 |
T |
|
| Q |
216 |
ttcgcctatct |
226 |
Q |
| |
|
|||| |||||| |
|
|
| T |
19400708 |
ttcgtctatct |
19400698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 19415360 - 19415121
Alignment:
| Q |
18 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagta |
117 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| ||||| || ||||| ||||||||||||||| | |||||| ||| || ||||||||||| |
|
|
| T |
19415360 |
agacatgctctgaggaatttcaccgtagaacttattatttgagaggtctagagattccatatttttcatgtcaccaatcagcttaggaattgttccagtc |
19415261 |
T |
|
| Q |
118 |
aaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagtt |
217 |
Q |
| |
|
|||| |||||||||||| ||||||||||| | ||||||||| ||||||||| || || ||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
19415260 |
aaattattgtgagataagtttaatgtttgtatttgaacaagtcgaaataattgcaatgtcacttctccagacaagctattggatg-aaaggtcaatagtt |
19415162 |
T |
|
| Q |
218 |
cgcctatcttgtcgcactttatacatataatcttgaccttt |
258 |
Q |
| |
|
|||||||| | | || | ||||| ||||||||||||||| |
|
|
| T |
19415161 |
cgcctatccggactaacatgatacacataatcttgaccttt |
19415121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 19456475 - 19456233
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || || | |||||||| |||||||||||||| |||||||| ||||| ||||| || ||| |
|
|
| T |
19456475 |
agagacatgctctgtggaatttcaccacaaaacttatttttggaaaattcgagagattccatatttttcatacctccaattgtcttcggtatggtaccaa |
19456376 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||||||| ||||| ||| ||| || ||||| |||||||||||||||| || || |||||||| |
|
|
| T |
19456375 |
agaaattattgtgagataagtttaatgtttgaacctgaacaaaccgaaacaattccaatggcacttctccagacaagctattggatg-aatcgtcaatag |
19456277 |
T |
|
| Q |
216 |
ttcgcctatcttgtcgcactttatacatataatcttgacctttt |
259 |
Q |
| |
|
||||||| ||| ||| |||||||| | |||||||||||||||| |
|
|
| T |
19456276 |
ttcgcctttctggtcaaactttataaacataatcttgacctttt |
19456233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 25464216 - 25464026
Alignment:
| Q |
28 |
tgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtcttt-ggtattgttccagtaaaatgattg |
126 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| | |||| |||| |
|
|
| T |
25464216 |
tgaggaattccaccacaaagcttgttattagaaagatcgagagattccatatttttcatgcctccaatc-tctttcggtattgttccaatgaaattattg |
25464118 |
T |
|
| Q |
127 |
tgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagttcg |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||| ||| ||| || ||||| |||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
25464117 |
tgagataagtttaatgtttgaacttgaaccagccgaaccaattccaatggcacttctccagacaagttattggctg-aaaggtcaatagttcg |
25464026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 19376798 - 19376592
Alignment:
| Q |
18 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagta |
117 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||||| || ||||| |||||||| ||||||| |||||| ||||||||||||||| | |
|
|
| T |
19376798 |
agacatggtctgaggaatttcaccataaaacttattactagagaggtcaagagattccatattcttcatgcatccaatatcttttggtattgttccaaca |
19376699 |
T |
|
| Q |
118 |
aaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagtt |
217 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||||||||| |||| ||| ||| || || || |||||||||||||||| || |||||||||||||| |
|
|
| T |
19376698 |
aaattattgtgagataagtttaacgtttgaacttgaacaaggtgaaacaattccaatggcaattctccagacaagctattggatg-aaaggtcaatagtt |
19376600 |
T |
|
| Q |
218 |
cgcctatc |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
19376599 |
cgcctatc |
19376592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 19352565 - 19352363
Alignment:
| Q |
21 |
catgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaa |
120 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
19352565 |
catggtctgcggaatttcaccaaaaaacttattattagagagatcgagagattccacatttttcatgcctccaatctcttttggtattgttccaatcaaa |
19352466 |
T |
|
| Q |
121 |
tgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagttcgc |
220 |
Q |
| |
|
| |||||| |||| ||||| ||||||| |||| |||| ||||| ||| ||| || |||| |||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
19352465 |
ttgttgtgatataagtttaacgtttgaagttgagcaagccgaaacaattccaatggaacttctccagacaagctattggatg-aaaggtcaacagttcgc |
19352367 |
T |
|
| Q |
221 |
ctat |
224 |
Q |
| |
|
|||| |
|
|
| T |
19352366 |
ctat |
19352363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 19354893 - 19354685
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtct-ttggtattgttcca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| ||||||| || ||||| |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19354893 |
agagacatgctctgaggaatgtcaccataaaacttattactagagaggtcaagagattccatatttttcatgcctccaatc-tctcttggtattgttcca |
19354795 |
T |
|
| Q |
115 |
gtaaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaata |
214 |
Q |
| |
|
| || | ||| |||||||| ||||| ||||||||||||||||| ||||| ||| ||| || |||| ||| |||| |||||||| ||||||||||| |
|
|
| T |
19354794 |
ttcaagttattatgagataagtttaaggtttgaacttgaacaagccgaaacaattccaatgtaacttctcctatcaagtgattgactg-aaaggtcaata |
19354696 |
T |
|
| Q |
215 |
gttcgcctatc |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
19354695 |
gttcgcctatc |
19354685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 16003314 - 16003181
Alignment:
| Q |
21 |
catgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaa |
120 |
Q |
| |
|
|||||| |||| |||||||||| ||||| ||||||| ||||| || | ||| || | |||||||||| || |||| ||| | ||||||||| | | ||| |
|
|
| T |
16003314 |
catgctttgagaaatttcaccagaaaacatattattggagaggtcaaaagattctagatttttcatgtctttaatcatctctagtattgttctacttaaa |
16003215 |
T |
|
| Q |
121 |
tgattgtgagataaatttaatgtttgaacttgaa |
154 |
Q |
| |
|
| ||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
16003214 |
ttattatgagataaattgaatgcttgaatttgaa |
16003181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 2709400 - 2709600
Alignment:
| Q |
21 |
catgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaa |
120 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||| |||| |||||||||||||| ||| |
|
|
| T |
2709400 |
catgctctgaggaatttcaccaaaaaatttattgttagagagatcgagagattccatgtttttcatgtctccaatcatcttgggtattgttccagtcaaa |
2709499 |
T |
|
| Q |
121 |
tgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagttcgc |
220 |
Q |
| |
|
| |||||||||||| || |||| ||||||||||||||| |||||||| ||| || ||||| |||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
2709500 |
ttattgtgagataagttcaatgattgaacttgaacaagttgaaataattccaatggcacttctccagacaagctattggctg-aaaggtcaatagttcgc |
2709598 |
T |
|
| Q |
221 |
ct |
222 |
Q |
| |
|
|| |
|
|
| T |
2709599 |
ct |
2709600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 15536699 - 15536509
Alignment:
| Q |
28 |
tgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaatgattgt |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
15536699 |
tgaggaatttcaccataaaacttattattagagagatcgagagattccatgtttatcatgccgccaatcgtctttggtattgttccaacaaaattattgt |
15536600 |
T |
|
| Q |
128 |
gagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagttcg |
219 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||| ||| ||| || || || ||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
15536599 |
gagataagtttaacgtttgaacttgaacaagccgaaacaattccaatggcagttccccaaacaagctattggctg-aaaggtcaatagttcg |
15536509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 8460744 - 8460537
Alignment:
| Q |
16 |
agagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
8460744 |
agagccatgctctgaggaatttcaccacaaaacttattattagagaggtcgagtgattccatatatttcatgcctccaatcatcttgggtattgttccaa |
8460645 |
T |
|
| Q |
116 |
taaaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatag |
215 |
Q |
| |
|
| |||| |||||||||||| || |||||||||||||| |||||| |||||||| ||| | ||||| |||||||||| |||| ||| |||||||||||| |
|
|
| T |
8460644 |
tcaaattattgtgagataagttcaatgtttgaacttggacaagatgaaataattccaacggcacttctccagacaagttattagctg-aaaggtcaatag |
8460546 |
T |
|
| Q |
216 |
ttcgcctat |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
8460545 |
ttcgcctat |
8460537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 13665774 - 13666013
Alignment:
| Q |
18 |
agacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagta |
117 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||| || | ||| |||||| ||||||| ||||||| | |||||||||||||| |
|
|
| T |
13665774 |
agacatgctccgaggaatttcaccaaaaaacttattattagagaagtccaaagattccataagtttcatgtctccaattagcaggggtattgttccagtc |
13665873 |
T |
|
| Q |
118 |
aaatgattgtgagataaatttaatgtttgaacttgaacaagacgaaataataccattgacacttttccagacaagctattgactgaaaaggtcaatagtt |
217 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||| |||||||| ||| || || || |||| |||||||||| ||| |||||||||||||| |
|
|
| T |
13665874 |
aaattattgtgagataagttcaatgtttgaacttgaacaagctgaaataattccagtggcaattctccaaacaagctattagctg-aaaggtcaatagtt |
13665972 |
T |
|
| Q |
218 |
cgcctatcttgtcgcactttatacatataatcttgaccttt |
258 |
Q |
| |
|
|| |||||| | |||| ||||||||||||||||||||| |
|
|
| T |
13665973 |
cgtctatctggattgacttgatacatataatcttgaccttt |
13666013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 1482502 - 1482585
Alignment:
| Q |
46 |
aacttattattagagagatcgagagactccatatttttcatgcctccaatcgtctttggtattgttccagtaaaatgattgtga |
129 |
Q |
| |
|
||||||||| ||||||| || ||||| |||||||| ||||||| |||||| ||||||||||||||| | |||| ||||||| |
|
|
| T |
1482502 |
aacttattactagagaggtcaagagattccatattcttcatgcgtccaatatcttttggtattgttccaatcaaattattgtga |
1482585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University