View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15998_low_1 (Length: 918)

Name: NF15998_low_1
Description: NF15998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15998_low_1
NF15998_low_1
[»] chr4 (31 HSPs)
chr4 (1-902)||(18019446-18020347)
chr4 (318-455)||(30207583-30207723)
chr4 (313-405)||(54325044-54325135)
chr4 (418-476)||(54414845-54414903)
chr4 (345-405)||(7368094-7368154)
chr4 (322-405)||(24929465-24929547)
chr4 (313-405)||(49219111-49219202)
chr4 (232-303)||(7367967-7368038)
chr4 (322-401)||(7694026-7694104)
chr4 (327-489)||(8422860-8423024)
chr4 (318-448)||(21157692-21157826)
chr4 (289-360)||(32799723-32799794)
chr4 (308-374)||(11264303-11264369)
chr4 (318-400)||(26747414-26747496)
chr4 (313-390)||(8468935-8469011)
chr4 (321-374)||(11158372-11158425)
chr4 (308-357)||(29467626-29467675)
chr4 (318-374)||(6466058-6466114)
chr4 (318-374)||(6978974-6979030)
chr4 (250-302)||(22236036-22236088)
chr4 (318-374)||(24370965-24371021)
chr4 (407-494)||(40709485-40709572)
chr4 (302-405)||(42321876-42321977)
chr4 (407-485)||(8703727-8703805)
chr4 (380-493)||(22684589-22684707)
chr4 (336-398)||(42866047-42866108)
chr4 (318-376)||(55084493-55084551)
chr4 (355-405)||(55870390-55870439)
chr4 (13-50)||(18020337-18020374)
chr4 (233-282)||(28615441-28615490)
chr4 (232-301)||(37636099-37636168)
[»] chr2 (36 HSPs)
chr2 (1-902)||(3058969-3059870)
chr2 (315-375)||(4085209-4085269)
chr2 (318-434)||(39983281-39983400)
chr2 (354-454)||(17952749-17952853)
chr2 (308-369)||(32821816-32821877)
chr2 (322-403)||(43141845-43141925)
chr2 (318-443)||(3235396-3235523)
chr2 (318-405)||(11513870-11513956)
chr2 (318-405)||(33942122-33942208)
chr2 (380-475)||(43808473-43808573)
chr2 (308-405)||(7103484-7103581)
chr2 (308-369)||(1939334-1939395)
chr2 (308-405)||(17221542-17221638)
chr2 (318-374)||(13736305-13736361)
chr2 (318-402)||(22681197-22681280)
chr2 (354-405)||(5043608-5043658)
chr2 (318-373)||(16785360-16785415)
chr2 (232-282)||(1830146-1830196)
chr2 (308-374)||(10563560-10563626)
chr2 (322-404)||(13630297-13630378)
chr2 (230-304)||(15120268-15120342)
chr2 (383-499)||(32098384-32098508)
chr2 (354-455)||(37053511-37053616)
chr2 (237-299)||(37276834-37276896)
chr2 (339-405)||(37292380-37292445)
chr2 (407-489)||(42974235-42974317)
chr2 (355-405)||(43299451-43299501)
chr2 (13-50)||(3058942-3058979)
chr2 (321-362)||(3973549-3973590)
chr2 (308-401)||(10285836-10285928)
chr2 (408-449)||(13234432-13234473)
chr2 (223-300)||(21279953-21280030)
chr2 (332-369)||(29419868-29419905)
chr2 (380-448)||(33267589-33267662)
chr2 (237-282)||(41170717-41170762)
chr2 (240-301)||(43985297-43985358)
[»] chr8 (41 HSPs)
chr8 (323-438)||(29973015-29973134)
chr8 (233-340)||(1664418-1664525)
chr8 (313-449)||(28769346-28769486)
chr8 (318-370)||(2458578-2458630)
chr8 (308-412)||(11795057-11795160)
chr8 (322-374)||(30277261-30277313)
chr8 (318-405)||(27728033-27728119)
chr8 (235-304)||(10062057-10062126)
chr8 (316-405)||(38561698-38561786)
chr8 (417-489)||(12972739-12972811)
chr8 (307-374)||(29973153-29973221)
chr8 (318-374)||(31705087-31705143)
chr8 (337-405)||(34770864-34770931)
chr8 (233-340)||(1892138-1892245)
chr8 (306-369)||(7107722-7107785)
chr8 (318-404)||(31862466-31862551)
chr8 (313-374)||(8062331-8062392)
chr8 (322-367)||(11188171-11188216)
chr8 (300-369)||(11415161-11415230)
chr8 (324-369)||(39268522-39268567)
chr8 (322-374)||(4558800-4558852)
chr8 (324-380)||(8060665-8060721)
chr8 (318-402)||(8062499-8062582)
chr8 (358-402)||(43704430-43704473)
chr8 (233-304)||(1889049-1889120)
chr8 (384-447)||(5290566-5290629)
chr8 (316-403)||(10075561-10075647)
chr8 (308-367)||(14949875-14949934)
chr8 (417-476)||(31875674-31875733)
chr8 (313-407)||(34570423-34570517)
chr8 (407-473)||(11476992-11477058)
chr8 (332-374)||(26473778-26473820)
chr8 (306-402)||(5088823-5088922)
chr8 (324-405)||(6864477-6864557)
chr8 (308-405)||(9699973-9700069)
chr8 (308-401)||(12361168-12361260)
chr8 (336-405)||(13561342-13561410)
chr8 (238-374)||(14926901-14927037)
chr8 (415-492)||(32157306-32157383)
chr8 (407-448)||(41620396-41620437)
chr8 (332-377)||(42197151-42197196)
[»] chr7 (23 HSPs)
chr7 (356-503)||(9527140-9527291)
chr7 (322-412)||(37064236-37064328)
chr7 (318-405)||(39505929-39506014)
chr7 (323-440)||(24909601-24909717)
chr7 (308-374)||(24363603-24363669)
chr7 (337-405)||(28340427-28340494)
chr7 (356-405)||(17989073-17989121)
chr7 (323-440)||(24895294-24895409)
chr7 (312-405)||(29363490-29363582)
chr7 (308-369)||(44615106-44615167)
chr7 (333-405)||(10190767-10190838)
chr7 (318-402)||(38010689-38010772)
chr7 (230-369)||(529382-529521)
chr7 (307-362)||(1710744-1710799)
chr7 (237-300)||(30535652-30535715)
chr7 (324-374)||(2825249-2825299)
chr7 (250-304)||(10079270-10079324)
chr7 (327-405)||(23721478-23721555)
chr7 (313-374)||(4966158-4966219)
chr7 (318-367)||(26935569-26935618)
chr7 (380-433)||(39345422-39345475)
chr7 (308-405)||(44151482-44151578)
chr7 (407-448)||(45078217-45078258)
[»] scaffold0199 (1 HSPs)
scaffold0199 (233-340)||(6859-6966)
[»] chr5 (35 HSPs)
chr5 (322-401)||(16889711-16889789)
chr5 (308-405)||(28586768-28586864)
chr5 (300-391)||(40205068-40205156)
chr5 (235-282)||(34198528-34198575)
chr5 (407-476)||(33961599-33961668)
chr5 (318-391)||(37588372-37588444)
chr5 (385-489)||(26516181-26516285)
chr5 (377-449)||(29281088-29281159)
chr5 (318-449)||(11684346-11684472)
chr5 (318-405)||(14295478-14295564)
chr5 (310-474)||(29588778-29588945)
chr5 (324-438)||(31030148-31030264)
chr5 (318-377)||(36318773-36318832)
chr5 (308-374)||(15074751-15074817)
chr5 (318-391)||(37526211-37526283)
chr5 (321-405)||(8985633-8985716)
chr5 (324-455)||(36539663-36539798)
chr5 (318-370)||(37611227-37611279)
chr5 (318-370)||(37787957-37788009)
chr5 (322-401)||(10272447-10272525)
chr5 (228-267)||(12074355-12074394)
chr5 (322-405)||(15003530-15003612)
chr5 (323-374)||(17368678-17368729)
chr5 (379-489)||(20982207-20982322)
chr5 (318-369)||(36638754-36638805)
chr5 (354-405)||(41277398-41277448)
chr5 (407-449)||(1961915-1961957)
chr5 (417-475)||(6738522-6738580)
chr5 (250-304)||(40534284-40534338)
chr5 (248-301)||(1084068-1084121)
chr5 (308-401)||(2468406-2468499)
chr5 (407-456)||(10391269-10391318)
chr5 (322-404)||(19138733-19138816)
chr5 (318-395)||(19369295-19369371)
chr5 (318-367)||(30653388-30653437)
[»] chr1 (27 HSPs)
chr1 (318-405)||(30257655-30257741)
chr1 (307-405)||(4215344-4215441)
chr1 (315-405)||(7218083-7218172)
chr1 (240-304)||(5157157-5157221)
chr1 (322-374)||(25479583-25479635)
chr1 (308-441)||(6279335-6279467)
chr1 (322-403)||(15361687-15361767)
chr1 (318-473)||(4200128-4200287)
chr1 (313-397)||(12564881-12564964)
chr1 (318-374)||(51929787-51929843)
chr1 (322-397)||(3924604-3924678)
chr1 (354-405)||(19462814-19462864)
chr1 (354-405)||(25006082-25006132)
chr1 (238-301)||(28467521-28467584)
chr1 (357-396)||(40751181-40751220)
chr1 (322-405)||(45205040-45205122)
chr1 (332-374)||(5924057-5924099)
chr1 (354-404)||(8130409-8130458)
chr1 (322-404)||(33723398-33723479)
chr1 (407-489)||(49560664-49560746)
chr1 (335-373)||(50319273-50319311)
chr1 (355-404)||(5756735-5756783)
chr1 (332-405)||(17269222-17269294)
chr1 (332-405)||(27738206-27738278)
chr1 (324-405)||(28467326-28467405)
chr1 (407-472)||(46504322-46504387)
chr1 (313-374)||(47598428-47598489)
[»] chr6 (16 HSPs)
chr6 (407-476)||(31461574-31461643)
chr6 (318-402)||(2117378-2117461)
chr6 (411-472)||(3217299-3217360)
chr6 (322-405)||(281864-281946)
chr6 (324-405)||(4006686-4006766)
chr6 (288-372)||(5564110-5564194)
chr6 (318-405)||(20671878-20671963)
chr6 (322-365)||(34939755-34939798)
chr6 (318-405)||(4420617-4420701)
chr6 (322-371)||(7931805-7931854)
chr6 (318-448)||(8010281-8010415)
chr6 (308-405)||(8420199-8420295)
chr6 (308-369)||(19275638-19275699)
chr6 (251-304)||(27857443-27857496)
chr6 (407-456)||(31668790-31668839)
chr6 (407-476)||(33068666-33068735)
[»] chr3 (29 HSPs)
chr3 (308-392)||(22214661-22214744)
chr3 (313-405)||(36646389-36646480)
chr3 (238-369)||(13709755-13709886)
chr3 (289-370)||(31403153-31403234)
chr3 (321-405)||(24887298-24887381)
chr3 (320-391)||(14548735-14548805)
chr3 (318-369)||(30923910-30923961)
chr3 (318-405)||(41452495-41452581)
chr3 (313-374)||(237399-237460)
chr3 (320-405)||(1816555-1816639)
chr3 (228-473)||(12923250-12923496)
chr3 (318-374)||(30322032-30322088)
chr3 (322-405)||(40122769-40122850)
chr3 (418-457)||(659934-659973)
chr3 (315-374)||(21367669-21367728)
chr3 (326-405)||(23315598-23315676)
chr3 (354-405)||(28306130-28306180)
chr3 (416-463)||(28842971-28843018)
chr3 (400-451)||(49772766-49772817)
chr3 (237-304)||(49845458-49845525)
chr3 (238-300)||(30321937-30321999)
chr3 (311-369)||(44284085-44284143)
chr3 (323-369)||(48528563-48528609)
chr3 (408-453)||(16790462-16790507)
chr3 (321-374)||(37138292-37138345)
chr3 (332-369)||(39311705-39311742)
chr3 (415-456)||(41671252-41671293)
chr3 (233-282)||(41848630-41848679)
chr3 (308-373)||(48048984-48049049)
[»] scaffold0003 (1 HSPs)
scaffold0003 (318-373)||(306329-306384)
[»] scaffold0110 (1 HSPs)
scaffold0110 (335-405)||(4252-4321)
[»] scaffold0654 (1 HSPs)
scaffold0654 (400-457)||(6735-6792)
[»] scaffold0014 (1 HSPs)
scaffold0014 (400-457)||(116654-116711)
[»] scaffold0024 (1 HSPs)
scaffold0024 (354-405)||(27548-27598)
[»] scaffold0200 (1 HSPs)
scaffold0200 (219-264)||(29659-29704)


Alignment Details
Target: chr4 (Bit Score: 826; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 1 - 902
Target Start/End: Complemental strand, 18020347 - 18019446
Alignment:
Q  1 ggtccttgaaaacataggcatcaaacaatttggtccctcagtccttgaaatcaacaagttccaaaaataatccgtaaaattgaaatactcattaacatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020347 ggtccttgaaaacataggcatcaaacaatttggtccctcagtccttgaaatcaacaagttccaaaaataatccgtaaaattgaaatactcattaacatta 18020248  T
Q  101 gttcatccaggacaacttcatggtcttaatcgaccaacccaaaagaactaacttgatcattcaatttcaatgactctttggagatttcaataattaagag 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020247 gttcatccaggacaacatcatggtcttaatcgaccaacccaaaagaactaacttgatcattcaatttcaatgactctttggagatttcaataattaagag 18020148  T
Q  201 aacaaattgtccgacccaattttatgaactaagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggaga 300  Q
      ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020147 gccaaattgtccgacacaattttatgaactaagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggaga 18020048  T
Q  301 gcttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgact 400  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  18020047 gcttataacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactcacaagtttatatgaaaacagtttgact 18019948  T
Q  401 ttattgtttgttacaaaaatagcttata-tataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaatagagtctaa 499  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18019947 ttatcgtttgttacaaaaatagcttatagtataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaatagagtctaa 18019848  T
Q  500 attgttgattattcacttgtttgtacaaactgaacatcaaagatacgaaaaaattccacgaagattcattccccccaaaattgtcagtacnnnnnnngca 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||       |||    
T  18019847 attgttgattattcacttgtttgtacaaactgaacatcaaagatacg-aaaaattccacgaagattcattccccccaaaattatcagtacaaaaaaagca 18019749  T
Q  600 aagcatacctgaaaaagtgtcataggaaaagagtgatgaatttcccttcctttaatttcatcaggcacaatatttttagtaatggaaattttcaagtaac 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18019748 aagcatacctgaaaaagtgtcataggaaaagagtgatgaatttcccttcctttaatttcatcaggcacaatatttttagtaatggaaattttcaagtaac 18019649  T
Q  700 tatacatcaaagacaaaaactttgcaataacaaaagcttcataacattctttaatagactccaaaagagtgaaaaactctttgcttcctctaatatccaa 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18019648 tatacatcaaagacaaaaactttgcaataacaaaagcttcataacattctttaatagactccaaaagagtgaaaaactctttgcttcctctaatatccaa 18019549  T
Q  800 gagaccaacaaaggaaacaatagcataaataggagccatgagaatgataataataatagctttttgttcttttggattcttccaatagaaaagatgctga 899  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18019548 gagaccaacaaaggaaacaatagcataaataggagccatgagaatgataatgataatagctttttgttcttttggattcttccaatagaaaagatgctga 18019449  T
Q  900 gac 902  Q
    |||    
T  18019448 gac 18019446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 318 - 455
Target Start/End: Original strand, 30207583 - 30207723
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttg----actttattgtttgtta 413  Q
    ||||||||||||| |||||||||||| |||||||   ||||||||||||||||||| | || ||||||||||||||||||    | |||||| |||||||    
T  30207583 aagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaactt-atagcttatatgaaaacagtttgatttattttattttttgtta 30207681  T
Q  414 caaaaatagcttatatataagcactaatatgataagtgctta 455  Q
     | || || | |||| ||||||||| ||||||||||||||||    
T  30207682 tagaactaacatatacataagcacttatatgataagtgctta 30207723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 54325044 - 54325135
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| |||||||||||||||||| ||||||||||||| |  ||||||| |||||| | ||| | || ||||||||||||||||||||||||||    
T  54325044 tccataagctgttttcagtttatctccataaactctccatgatagcttttgaaaatagctt-atagcttatatgaaaacagtttgactttatt 54325135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 54414903 - 54414845
Alignment:
Q  418 aatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaag 476  Q
    ||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||    
T  54414903 aatagcttatacataagcacttatatgataagcgcttataacataaacacttaattaag 54414845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 7368094 - 7368154
Alignment:
Q  345 ctctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||| |||||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  7368094 ctctctagaatagcttatggaaacaacttataagcttatatgaaaacaatttgactttatt 7368154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 322 - 405
Target Start/End: Complemental strand, 24929547 - 24929465
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||| |||||||||||| |||||||| | || ||||||||||||||| | || || ||||||||||||| |||||||||    
T  24929547 tgttttcagcttatttccataagctctctagtagagtttatgaaaacaactt-atagcttttatgaaaacagttagactttatt 24929465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 405
Target Start/End: Complemental strand, 49219202 - 49219111
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| ||| ||||||||| |||||||||||| |||| ||  |||| ||||||||||||||| | || ||||||||||| | ||||||||||||    
T  49219202 tccataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaactt-atagcttatatgaaaataatttgactttatt 49219111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 7367967 - 7368038
Alignment:
Q  232 agggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagct 303  Q
    ||||||||||||||| ||||||||||||||||| |||   ||||||| |||  || ||||||||||||||||    
T  7367967 agggtctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagct 7368038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 7694026 - 7694104
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactt 401  Q
    ||||||||| |||||||||||||||||| || ||| |||||||||||| ||| | || |||||  |||||||||||||||    
T  7694026 tgttttcagcttatttccataaactctccaggataacttatgaaaacagctt-atagcttatacaaaaacagtttgactt 7694104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 327 - 489
Target Start/End: Original strand, 8422860 - 8423024
Alignment:
Q  327 tcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagt---ttgactttattgtttgttacaaaaatagc 423  Q
    |||| |||||| ||||||||||| |  |||| || ||||||||||||| | | ||||||||||||| |   || | |||||  ||| ||| |||||||||    
T  8422860 tcagcttatttgcataaactctccaagatagattgtgaaaacaacttata-gcttatatgaaaacaatgactttattttatctttttttataaaaatagc 8422958  T
Q  424 ttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaa 489  Q
    ||||| ||||||||  ||||||||  || ||||  |||||||||||||||||| || || ||||||    
T  8422959 ttatacataagcacatatatgatacatgattatgctataaacacttaattaagttgtttatccaaa 8423024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 448
Target Start/End: Complemental strand, 21157826 - 21157692
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgac-----tttattgtttgtt 412  Q
    |||||||||| || |||||||||||| ||||  || ||||| |||||||||| ||| | || ||| ||||||||||||||||     |||||  ||||||    
T  21157826 aagctgtttttagcttatttccataagctcttcaggatagcatatgaaaacatctt-atagcttacatgaaaacagtttgactttagtttatactttgtt 21157728  T
Q  413 acaaaaatagcttatatataagcactaatatgataa 448  Q
    |  ||||||||| ||| ||||||||| |||||||||    
T  21157727 atcaaaatagctgatacataagcacttatatgataa 21157692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 32799723 - 32799794
Alignment:
Q  289 ctgtttgggagagcttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagctt 360  Q
    ||||||| |||||||| | ||| ||||| ||||||||||||| ||||||| ||||||||||||  |||||||    
T  32799723 ctgtttgagagagcttatgacacatccataagctgttttcagcttatttcgataaactctctatgatagctt 32799794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 374
Target Start/End: Complemental strand, 11264369 - 11264303
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| |||| || |||||||||  |||||||||||| |||||||| || ||||||||||||||||||    
T  11264369 acatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaactta 11264303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 400
Target Start/End: Original strand, 26747414 - 26747496
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgact 400  Q
    ||||| |||| || ||||||||||||  ||| ||| ||| || |||||||||||||| ||| ||||||||||| |||||||||    
T  26747414 aagctttttttagcttatttccataagttctttaggataactaatgaaaacaacttataagcttatatgaaaatagtttgact 26747496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 8469011 - 8468935
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaa 390  Q
    |||| ||| ||||||||| |||||| ||||| |||||||| ||| |||||||||||||| ||| || |||||||||||    
T  8469011 tccataagttgttttcagattattttcataagctctctagaataacttatgaaaacaac-taatagcttatatgaaaa 8468935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 11158372 - 11158425
Alignment:
Q  321 ctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||||||| ||||||||| || |||||||  |||||||||||||||||||||    
T  11158372 ctgttttcagcttatttccacaagctctctaagatagcttatgaaaacaactta 11158425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 29467626 - 29467675
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatag 357  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||| ||||    
T  29467626 acatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 6466058 - 6466114
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||| ||||||  |||||||||||| |||||||| |||||||||| ||||||||||    
T  6466058 aagctattttcaacttatttccataatctctctagaatagcttatggaaacaactta 6466114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 6978974 - 6979030
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||||||||||| |||||| |||||||||| ||| || |||||| |||||||||||    
T  6978974 aagctgttttcagcttattttcataaactctttaggatggcttataaaaacaactta 6979030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 22236036 - 22236088
Alignment:
Q  250 cttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagc 302  Q
    |||||||||||| |||||| ||||||| |||||  ||||||||||||||||||    
T  22236036 cttatttgagttcatttactaacataaccacttgcgaaactgtttgggagagc 22236088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 24370965 - 24371021
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| |||||||| ||||||| ||||||| | ||| |||||||||||||||||||||    
T  24370965 aagccgttttcagcttatttctataaactatttaggatagcttatgaaaacaactta 24371021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 494
Target Start/End: Original strand, 40709485 - 40709572
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaatagag 494  Q
    ||||||| | ||| |||||||| ||||||||| ||||  |||||| |||| |||||| |||||||||||| || || |||| ||||||    
T  40709485 tttgttatagaaacagcttataaataagcacttatatattaagtggttatgatataagcacttaattaagttgtttatccatatagag 40709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 405
Target Start/End: Original strand, 42321876 - 42321977
Alignment:
Q  302 cttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactt 401  Q
    |||||||||| | || ||| ||||||||||||| |||  ||||||||  |  ||| |||| |||||||||||| || |||||||||||||| ||||||||    
T  42321876 cttgtaacatgttcataagttgttttcagtttagttctttaaactcttcattataactta-gaaaacaacttataa-tttatatgaaaacaatttgactt 42321973  T
Q  402 tatt 405  Q
    ||||    
T  42321974 tatt 42321977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 485
Target Start/End: Original strand, 8703727 - 8703805
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtc 485  Q
    ||||||| | |||||||||||| ||||||||| || ||||||||  ||||  ||||| |||||||||||| || |||||    
T  8703727 tttgttagagaaatagcttatacataagcactcatctgataagtatttatgttataagcacttaattaagctgtttgtc 8703805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 493
Target Start/End: Original strand, 22684589 - 22684707
Alignment:
Q  380 ttatatgaaaacagtttgactttatt-----gtttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaatta 474  Q
    ||||||||||||| ||||||||||||     |||||||| | |||||||||||| | ||||| | |||||||||| || |||  ||||| || |||||||    
T  22684589 ttatatgaaaacaatttgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgataagcgcatatggtataagcaattaatta 22684688  T
Q  475 agatgattgtccaaataga 493  Q
    || || || ||||| ||||    
T  22684689 agttgtttatccaactaga 22684707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 42866108 - 42866047
Alignment:
Q  336 ttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttga 398  Q
    |||||||| ||||| || |||||||||||||||||||| | || |||||| ||||||||||||    
T  42866108 ttccataagctctcaaggatagcttatgaaaacaactt-atagcttatataaaaacagtttga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 55084493 - 55084551
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaa 376  Q
    |||||| |||||| |||||| ||||| |||||||  |||||| ||||||||||||||||    
T  55084493 aagctggtttcagcttattttcataagctctctaagatagctcatgaaaacaacttaaa 55084551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 55870390 - 55870439
Alignment:
Q  355 tagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||||||||||||||| | | |||| |||||||||||||||||||||    
T  55870390 tagcttatgaaaacaacttata-gcttatgtgaaaacagtttgactttatt 55870439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 18020374 - 18020337
Alignment:
Q  13 cataggcatcaaacaatttggtccctcagtccttgaaa 50  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  18020374 cataggcgtcaaacaatttggtccctcggtccttgaaa 18020337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 28615490 - 28615441
Alignment:
Q  233 gggtctgtttggatcgacttatttgagtttatttacgaacataaacactt 282  Q
    |||||||||||||| ||||||||| ||||||| ||| | |||||||||||    
T  28615490 gggtctgtttggattgacttatttaagtttatctactagcataaacactt 28615441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 37636099 - 37636168
Alignment:
Q  232 agggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagag 301  Q
    ||||||| ||||||| || |||||||||||||| ||| ||||||| ||| |   ||||||||||||||||    
T  37636099 agggtctatttggattgatttatttgagtttatctactaacataagcacctgtaaaactgtttgggagag 37636168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 826; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 1 - 902
Target Start/End: Original strand, 3058969 - 3059870
Alignment:
Q  1 ggtccttgaaaacataggcatcaaacaatttggtccctcagtccttgaaatcaacaagttccaaaaataatccgtaaaattgaaatactcattaacatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058969 ggtccttgaaaacataggcatcaaacaatttggtccctcagtccttgaaatcaacaagttccaaaaataatccgtaaaattgaaatactcattaacatta 3059068  T
Q  101 gttcatccaggacaacttcatggtcttaatcgaccaacccaaaagaactaacttgatcattcaatttcaatgactctttggagatttcaataattaagag 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059069 gttcatccaggacaacatcatggtcttaatcgaccaacccaaaagaactaacttgatcattcaatttcaatgactctttggagatttcaataattaagag 3059168  T
Q  201 aacaaattgtccgacccaattttatgaactaagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggaga 300  Q
      ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059169 gccaaattgtccgacacaattttatgaactaagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggaga 3059268  T
Q  301 gcttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgact 400  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  3059269 gcttataacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactcacaagtttatatgaaaacagtttgact 3059368  T
Q  401 ttattgtttgttacaaaaatagcttata-tataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaatagagtctaa 499  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059369 ttatcgtttgttacaaaaatagcttatagtataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaatagagtctaa 3059468  T
Q  500 attgttgattattcacttgtttgtacaaactgaacatcaaagatacgaaaaaattccacgaagattcattccccccaaaattgtcagtacnnnnnnngca 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||       |||    
T  3059469 attgttgattattcacttgtttgtacaaactgaacatcaaagatacg-aaaaattccacgaagattcattccccccaaaattatcagtacaaaaaaagca 3059567  T
Q  600 aagcatacctgaaaaagtgtcataggaaaagagtgatgaatttcccttcctttaatttcatcaggcacaatatttttagtaatggaaattttcaagtaac 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059568 aagcatacctgaaaaagtgtcataggaaaagagtgatgaatttcccttcctttaatttcatcaggcacaatatttttagtaatggaaattttcaagtaac 3059667  T
Q  700 tatacatcaaagacaaaaactttgcaataacaaaagcttcataacattctttaatagactccaaaagagtgaaaaactctttgcttcctctaatatccaa 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059668 tatacatcaaagacaaaaactttgcaataacaaaagcttcataacattctttaatagactccaaaagagtgaaaaactctttgcttcctctaatatccaa 3059767  T
Q  800 gagaccaacaaaggaaacaatagcataaataggagccatgagaatgataataataatagctttttgttcttttggattcttccaatagaaaagatgctga 899  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059768 gagaccaacaaaggaaacaatagcataaataggagccatgagaatgataatgataatagctttttgttcttttggattcttccaatagaaaagatgctga 3059867  T
Q  900 gac 902  Q
    |||    
T  3059868 gac 3059870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 4085209 - 4085269
Alignment:
Q  315 cacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaa 375  Q
    ||||||||| |||| ||||||||||||||||||| | | ||||||||||||||||||||||    
T  4085209 cacaagctgctttctgtttatttccataaactctgtgggatagcttatgaaaacaacttaa 4085269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 318 - 434
Target Start/End: Complemental strand, 39983400 - 39983281
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt----gtttgtta 413  Q
    ||||| |||||||||||||| ||| | ||||| || |||||||||||||||||||| | || |||||||||||   ||| | ||||||     |||||||    
T  39983400 aagctattttcagtttattttcattagctctccaggatagcttatgaaaacaactt-atagcttatatgaaaattattttattttattttacctttgtta 39983302  T
Q  414 caaaaatagcttatatataag 434  Q
    |||||||||||||||||||||    
T  39983301 caaaaatagcttatatataag 39983281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 17952749 - 17952853
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgt-----ttgttacaaaaatagcttatatataagcactaatatgataa 448  Q
    |||||||||||||||| |||  | | ||||||||||| |||||||||||||| |     |||||| | ||||||||||||||||||| || |||||||||    
T  17952749 atagcttatgaaaacatcttgta-gcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataa 17952847  T
Q  449 gtgctt 454  Q
    ||||||    
T  17952848 gtgctt 17952853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 32821877 - 32821816
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||| |||| ||||||||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  32821877 acatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaaca 32821816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 43141925 - 43141845
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgacttta 403  Q
    |||||||| ||||||||||||||||||  || |||||||||||||||| ||| | || ||||||| ||||| ||||||||||    
T  43141925 tgttttcattttatttccataaactcttcaggatagcttatgaaaacatctt-atagcttatatggaaacaatttgacttta 43141845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 443
Target Start/End: Original strand, 3235396 - 3235523
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt----gtttgtta 413  Q
    ||||||||||||| ||||||||||||||| |  |  ||||  |||||||||| ||| | |||||||||| ||||||||||||||||||     |||||||    
T  3235396 aagctgttttcagcttatttccataaacttttcaagatagtatatgaaaacagctt-atagtttatatg-aaacagtttgactttatttttcatttgtta 3235493  T
Q  414 caaaaatagcttatatataagcactaatat 443  Q
     |||||||||| ||| ||||||||| ||||    
T  3235494 taaaaatagctaatacataagcacttatat 3235523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 11513956 - 11513870
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| ||||||| ||||||||| ||  |||| |  |||||||||||||||||||| | || ||||||||||||| ||||||||||||    
T  11513956 aagctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaactt-atagcttatatgaaaacaatttgactttatt 11513870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 33942208 - 33942122
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||| | |||| ||| | |||||||  || ||||||||||||||||| | || ||| ||||||||||||||||||||||    
T  33942208 aagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaactt-atagcttacatgaaaacagtttgactttatt 33942122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 380 - 475
Target Start/End: Complemental strand, 43808573 - 43808473
Alignment:
Q  380 ttatatgaaaacagtttgactttatt----gtttgttacaaaaa-tagcttatatataagcactaatatgataagtgcttataatataaacacttaatta 474  Q
    ||||||||||| ||||| ||||||||    |||||||| ||||| ||||||||| |||| |||| |||||||| | ||||||  ||||||||||||||||    
T  43808573 ttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatgctataaacacttaatta 43808474  T
Q  475 a 475  Q
    |    
T  43808473 a 43808473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 7103484 - 7103581
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatg-aaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||| ||| |||||| || |||||| || ||||||||||  |||||||||| |||||| ||| | || |||||| |||||||||||||||||||    
T  7103484 acatatccataagttgtttttagcttattttcacaaactctctaagatagcttatgaaaaacagctt-atagcttatattaaaacagtttgactttatt 7103581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 1939334 - 1939395
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||| |||| ||||||||||||  |||||||||||| ||||| || ||||||||||||||||    
T  1939334 acatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaaca 1939395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 17221542 - 17221638
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||| || || |||| || |||||||| |||  ||||| | ||||||||||||||| |||||| || |||||||| |||| ||||||||||||    
T  17221542 acatatccataaactttttttagcttatttccgtaagatctctcggatagcttatgaaaac-acttaatagcttatatgagaacaatttgactttatt 17221638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 13736305 - 13736361
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||||||||||  |||||| ||||| |||||||| |||||||||||||||| ||||    
T  13736305 aagctgttttcaagttattttcataagctctctagtatagcttatgaaaacagctta 13736361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 22681197 - 22681280
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgacttt 402  Q
    |||||||||| || ||||||||||||  ||||||| |||| ||||||||||| ||| | || ||||||||||||| |||| ||||    
T  22681197 aagctgtttttagcttatttccataagttctctaggatagattatgaaaacagctt-atagcttatatgaaaacaatttggcttt 22681280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 5043608 - 5043658
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||||||||    
T  5043608 atagcttatgaaaacaacttcta-gcttatatgaaaacagtttgactttatt 5043658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 16785360 - 16785415
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactt 373  Q
    ||||||||||||| |||| ||||||||||||  || ||| ||||||||||||||||    
T  16785360 aagctgttttcagattatctccataaactcttcaggatatcttatgaaaacaactt 16785415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 1830196 - 1830146
Alignment:
Q  232 agggtctgtttggatcgacttatttgagtttatttacgaacataaacactt 282  Q
    |||| |||||||||| |||||||||||||||||||||  |||||| |||||    
T  1830196 agggcctgtttggattgacttatttgagtttatttactgacataagcactt 1830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 10563560 - 10563626
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| |||| ||||| ||||||| |||||| | ||| ||||  ||||||||||||||||||||||||    
T  10563560 acatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaactta 10563626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 13630297 - 13630378
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttat 404  Q
    ||||||||  |||||  ||||||||||| || |||| ||| ||||||||||||   | |||||||||||||||||||||||||    
T  13630297 tgttttcaacttattgtcataaactctcaaggatagattaggaaaacaacttatt-gattatatgaaaacagtttgactttat 13630378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 15120342 - 15120268
Alignment:
Q  230 taagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    ||||| ||||||||||| |||||||||||  |||| ||| | |||||||| ||  ||| ||||||||||||||||    
T  15120342 taaggatctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagctt 15120268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 383 - 499
Target Start/End: Original strand, 32098384 - 32098508
Alignment:
Q  383 tatgaaaacagtttgactttattgt-----ttgttacaaaaatagcttatatataagcact---aatatgataagtgcttataatataaacacttaatta 474  Q
    |||||||||| |||||||||||| |     |||||| | |||||||||||||||||||| |    ||||||||| || ||||  ||||| ||||||| ||    
T  32098384 tatgaaaacactttgactttattttatcttttgttatagaaatagcttatatataagcatttagtatatgataactgtttatgctataagcacttaagta 32098483  T
Q  475 agatgattgtccaaatagagtctaa 499  Q
    || || || ||||||||||||||||    
T  32098484 agttgtttatccaaatagagtctaa 32098508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 354 - 455
Target Start/End: Complemental strand, 37053616 - 37053511
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgttt-----gttacaaaaatagcttatatataagcactaatatgataa 448  Q
    |||||| ||||||| |||||| || || |||||||||||||||||||||||| | |     |||| | ||||||  |||| ||||||||| |||||||||    
T  37053616 atagctaatgaaaaaaacttataactt-atatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataa 37053518  T
Q  449 gtgctta 455  Q
    |||||||    
T  37053517 gtgctta 37053511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 37276896 - 37276834
Alignment:
Q  237 ctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggag 299  Q
    |||||||||||||||||||| ||||||| ||| || |||| |||||  || ||||||||||||    
T  37276896 ctgtttggatcgacttatttaagtttatctactaatataagcacttgtgagactgtttgggag 37276834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 37292380 - 37292445
Alignment:
Q  339 cataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||| || |||||||| ||||||||| ||| || ||||||||||| ||||| ||||||||    
T  37292380 cataaactctccaggatagcttaagaaaacaac-taatagcttatatgaaaatagttttactttatt 37292445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 489
Target Start/End: Complemental strand, 42974317 - 42974235
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaa 489  Q
    ||||||| | |||||| ||||| | |||||||||||||||||||| ||||  ||||| | |||||||||| || || ||||||    
T  42974317 tttgttatagaaatagtttatacacaagcactaatatgataagtgtttatgctataagctcttaattaagttgcttatccaaa 42974235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 43299451 - 43299501
Alignment:
Q  355 tagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||||||||||||||| |  ||||||  |||||||||||||||||||    
T  43299451 tagcttatgaaaacaacttatagatttatacaaaaacagtttgactttatt 43299501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 3058942 - 3058979
Alignment:
Q  13 cataggcatcaaacaatttggtccctcagtccttgaaa 50  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  3058942 cataggcgtcaaacaatttggtccctcggtccttgaaa 3058979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 3973590 - 3973549
Alignment:
Q  321 ctgttttcagtttatttccataaactctctagcatagcttat 362  Q
    |||||||||| |||||||||||||||| |||| |||||||||    
T  3973590 ctgttttcagcttatttccataaactccctaggatagcttat 3973549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 10285928 - 10285836
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactt 401  Q
    |||| |||| ||||||||||||  ||||||||||||  ||||||   ||||||||| |||| |||| | || |||||||||| |||||||||||    
T  10285928 acatgtccataagctgttttcaacttatttccataagttctctatgttagcttatgcaaacgactt-atagcttatatgaaaccagtttgactt 10285836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 13234473 - 13234432
Alignment:
Q  408 ttgttacaaaaatagcttatatataagcactaatatgataag 449  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  13234473 ttgttacaaaaaaagcttacatataagcacttatatgataag 13234432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 21279953 - 21280030
Alignment:
Q  223 tatgaactaagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggaga 300  Q
    |||||| ||||||| |||||| || |||||||||||||||||   |  ||||||| ||||| || |||||||||||||    
T  21279953 tatgaattaagggtttgtttgaattgacttatttgagtttatcggctgacataaatacttacgagactgtttgggaga 21280030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 29419905 - 29419868
Alignment:
Q  332 ttatttccataaactctctagcatagcttatgaaaaca 369  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  29419905 ttatttccataaactctctaggatagcatatgaaaaca 29419868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 448
Target Start/End: Original strand, 33267589 - 33267662
Alignment:
Q  380 ttatatgaaaacagtttgactttat-----tgtttgttacaaaaatagcttatatataagcactaatatgataa 448  Q
    ||||||||||||||||| |||||||     ||||||||| | |||||| ||||| ||||||||| |||||||||    
T  33267589 ttatatgaaaacagtttaactttattttactgtttgttatagaaatagattatacataagcacttatatgataa 33267662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 41170762 - 41170717
Alignment:
Q  237 ctgtttggatcgacttatttgagtttatttacgaacataaacactt 282  Q
    |||||||||| | ||||||||||||||| ||| |||||||||||||    
T  41170762 ctgtttggattggcttatttgagtttatctactaacataaacactt 41170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 43985358 - 43985297
Alignment:
Q  240 tttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagag 301  Q
    ||||||||||||||||| ||||||| |||  ||||||||||||   |||||||||| |||||    
T  43985358 tttggatcgacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagag 43985297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 323 - 438
Target Start/End: Complemental strand, 29973134 - 29973015
Alignment:
Q  323 gttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt-----gtttgttacaaa 417  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| | || |||| |||||| ||||||||||||||      | ||||| | |    
T  29973134 gttttcagtttatttccataaactctcaaggatagcttatgaaaacaactt-atagcttatgtgaaaatagtttgactttattttaccttgtgttaaaga 29973036  T
Q  418 aatagcttatatataagcact 438  Q
    |||||||||||||||||||||    
T  29973035 aatagcttatatataagcact 29973015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 1664525 - 1664418
Alignment:
Q  233 gggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttgtaacatatccacaagctgttttcagtt 332  Q
    |||||||||| ||| ||||||||||||||||| ||| | |||||||||||  || ||||||||||||||||| | |||| ||||  || |||||| ||||    
T  1664525 gggtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtccattagttgttttgagtt 1664426  T
Q  333 tatttcca 340  Q
    ||||||||    
T  1664425 tatttcca 1664418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 313 - 449
Target Start/End: Original strand, 28769346 - 28769486
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgac-----tttattgt 407  Q
    |||| ||| ||||||||| |||||||||||||||||| |  |||||||||||||||| ||| | || ||||| ||||| ||||||||     ||||| ||    
T  28769346 tccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagctt-atagcttataagaaaatagtttgacttaattttatagt 28769444  T
Q  408 ttgttacaaaaatagcttatatataagcactaatatgataag 449  Q
    |||||| |  ||||||||||| ||||||| | ||||||||||    
T  28769445 ttgttataggaatagcttatacataagcatttatatgataag 28769486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 2458578 - 2458630
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaa 370  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  2458578 aagctgttttcagtttatttccataagctctctaggatagcttatgtaaacaa 2458630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 11795160 - 11795057
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgt 407  Q
    |||| |||| || |||||||||| |||||||||||| ||||| |  ||||||||||||| || |||| ||  ||||||||||||||| ||||||||||||    
T  11795160 acatgtccataacctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataa-cttatatgaaaacagtgtgactttattgt 11795062  T
Q  408 ttgtt 412  Q
     ||||    
T  11795061 atgtt 11795057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 30277261 - 30277313
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  30277261 tgttttcagcttatttccataaactctctaggatagcttatgaaaacagctta 30277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 27728033 - 27728119
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| |||| || |||||||||| | | |||||| |||||||||||||||||| ||| | |||||||||||| ||||||||||||||    
T  27728033 aagctttttttagcttatttccatcatccctctaggatagcttatgaaaacaac-taatactttatatgaaaatagtttgactttatt 27728119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 10062057 - 10062126
Alignment:
Q  235 gtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    |||||||||||| | |||||||||| |||| ||| ||||| |||||||| |||||| |||||||||||||    
T  10062057 gtctgtttggattggcttatttgagcttatctactaacatcaacacttacgaaactatttgggagagctt 10062126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 316 - 405
Target Start/End: Complemental strand, 38561786 - 38561698
Alignment:
Q  316 acaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||| |||||||| ||| |||||||||  |||| ||||||||||||||| | ||| || || |||| ||||||||||||||    
T  38561786 acaagctgttttccgtttattttcatgaactctctataatagtttatgaaaacaactt-atagtatagataaaaatagtttgactttatt 38561698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 12972811 - 12972739
Alignment:
Q  417 aaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaa 489  Q
    |||||||||||| ||||||||| ||||||||| |||||||  ||||| | |||||||||| || |||||||||    
T  12972811 aaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgtttgtccaaa 12972739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 29973221 - 29973153
Alignment:
Q  307 aacatatccacaagctg-ttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||| |||| |||||| ||||||||||||||||||||| |||| || ||||||| |||||||||||||    
T  29973221 aacatgtccaaaagctggttttcagtttatttccataaattctcaaggatagcttgtgaaaacaactta 29973153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 31705143 - 31705087
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||||| ||||    
T  31705143 aagctgttttcagcttatttccataaactctcaaggacagcttatgaaaacagctta 31705087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 34770931 - 34770864
Alignment:
Q  337 tccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| |||||||||| |||||||||||||||||||| | || ||| ||||||||| ||||||||||||    
T  34770931 tccatgaactctctaggatagcttatgaaaacaactt-atagcttaaatgaaaacaatttgactttatt 34770864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 233 - 340
Target Start/End: Original strand, 1892138 - 1892245
Alignment:
Q  233 gggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttgtaacatatccacaagctgttttcagtt 332  Q
    |||||||||| ||| ||||||||||||||||| |||   |||||||||||  || | ||||||| ||||||| | |||| ||||  || |||||| ||||    
T  1892138 gggtctgtttagattgacttatttgagtttatctaccgtcataaacacttgtgagattgtttggcagagcttatgacatgtccattagttgttttgagtt 1892237  T
Q  333 tatttcca 340  Q
    ||||||||    
T  1892238 tatttcca 1892245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 7107722 - 7107785
Alignment:
Q  306 taacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||||| |||| |||| |||||| ||||||||||||||||||||  | ||||||||||||||||    
T  7107722 taacatgtccataagcggttttctgtttatttccataaactctcctgaatagcttatgaaaaca 7107785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 31862551 - 31862466
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttat 404  Q
    ||||||||||||| |||||| ||||| |||||||| ||| |||||||||||| ||| | || ||||| || || |||||||||||||    
T  31862551 aagctgttttcagcttattttcataagctctctaggataacttatgaaaacatctt-atagcttatacgagaatagtttgactttat 31862466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 8062392 - 8062331
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| ||| ||||||||| |||||||||||| |||||||  |||||||||||||||| ||||    
T  8062392 tccataagatgttttcagcttatttccataatctctctaagatagcttatgaaaacagctta 8062331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 11188171 - 11188216
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaa 367  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  11188171 tgttttcagtttattaccataaactctctaggatagcttatcaaaa 11188216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 11415230 - 11415161
Alignment:
Q  300 agcttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    ||||| |||||| |||| ||||| || |||| |||||| || ||||||||||| ||||||||||||||||    
T  11415230 agcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaaca 11415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 39268522 - 39268567
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||||||||||||||||||| |||||||| | ||||||||||||||    
T  39268522 ttttcagtttatttccataagctctctagaaaagcttatgaaaaca 39268567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 4558852 - 4558800
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||| ||||||||||||||| |||||||| |||||||||| ||||| ||||    
T  4558852 tgtttttagtttatttccataagctctctaggatagcttatggaaacagctta 4558800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 8060721 - 8060665
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtt 380  Q
    ||||||| |||||||||||| |||||||| || ||||||||||||| |||| |||||    
T  8060721 ttttcagcttatttccataagctctctaggattgcttatgaaaacagcttataagtt 8060665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 8062582 - 8062499
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgacttt 402  Q
    ||||| ||| ||| |||||| |||||||||||||  ||||||||||| |||| ||| | || ||||||||||||| |||||||||    
T  8062582 aagctatttccagcttattttcataaactctctaagatagcttatgagaacatctt-atagcttatatgaaaacaatttgacttt 8062499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 43704430 - 43704473
Alignment:
Q  358 cttatgaaaacaacttaaaagtttatatgaaaacagtttgacttt 402  Q
    ||||||||||||||||| | |||||||||||||||||||||||||    
T  43704430 cttatgaaaacaacttata-gtttatatgaaaacagtttgacttt 43704473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 1889049 - 1889120
Alignment:
Q  233 gggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    |||||||||| ||| ||||||||||||||||| |||   |||||||||||  || ||||||||||| |||||    
T  1889049 gggtctgtttagatggacttatttgagtttatctactggcataaacacttttgagactgtttgggaaagctt 1889120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 447
Target Start/End: Complemental strand, 5290629 - 5290566
Alignment:
Q  384 atgaaaacagtttgactttattgtttgttacaaaaatagcttatatataagcactaatatgata 447  Q
    ||||||||||||||||| | || ||||||| | |||||||||||| |||||||||  |||||||    
T  5290629 atgaaaacagtttgactattttatttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 403
Target Start/End: Original strand, 10075561 - 10075647
Alignment:
Q  316 acaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgacttta 403  Q
    |||||||| ||| || |||||| ||||| |||||||| |||||||||||||| | |||| ||  |||||| |||| ||||||||||||    
T  10075561 acaagctgcttttagcttattttcataagctctctaggatagcttatgaaaatagcttataa-cttatataaaaatagtttgacttta 10075647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 367
Target Start/End: Complemental strand, 14949934 - 14949875
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaa 367  Q
    |||| |||| ||||||||||||| ||||||| |||| |||| ||| ||||||||||||||    
T  14949934 acatgtccataagctgttttcagcttatttctataatctctttaggatagcttatgaaaa 14949875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 476
Target Start/End: Original strand, 31875674 - 31875733
Alignment:
Q  417 aaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaag 476  Q
    |||||||||||| ||||||||| |||||||||| ||||||  ||||||| ||| ||||||    
T  31875674 aaatagcttatagataagcacttatatgataagcgcttatgctataaacgcttcattaag 31875733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 34570517 - 34570423
Alignment:
Q  313 tccacaagctgtttt-cagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgt 407  Q
    |||| |||||||||| ||| |||||||||||  |||||| | |||| || |||||| |||||    ||||||||||||||||||||||||||||||    
T  34570517 tccataagctgttttacagcttatttccatatgctctctcggatagtttgtgaaaataacttgtt-gtttatatgaaaacagtttgactttattgt 34570423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 473
Target Start/End: Original strand, 11476992 - 11477058
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaatt 473  Q
    ||||||||| |||||||||||| || |||||| |||||||||  ||||||  ||||| |||||||||    
T  11476992 tttgttacagaaatagcttatacattagcacttatatgataaaagcttatgctataagcacttaatt 11477058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 26473778 - 26473820
Alignment:
Q  332 ttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  26473778 ttattttcataagctctctaggatagcttatgaaaacaactta 26473820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 402
Target Start/End: Complemental strand, 5088922 - 5088823
Alignment:
Q  306 taacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta---aaagtttatatgaaaacagtttgacttt 402  Q
    |||||| |||| ||||||||||||  ||||||| |||| ||||| || || |||| |||||||||||||   | || ||||||||||| | |||||||||    
T  5088922 taacatgtccataagctgttttcaacttatttcaataagctctccaggatcgcttgtgaaaacaacttatatatagcttatatgaaaataatttgacttt 5088823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 405
Target Start/End: Original strand, 6864477 - 6864557
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||| ||||||||  || ||||| |  ||||||||||||||||||||| ||  ||| ||||||| ||||||||||||||    
T  6864477 ttttcagcttatttcctcaagctctccaaaatagcttatgaaaacaacttataa-cttacatgaaaatagtttgactttatt 6864557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 9700069 - 9699973
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| |||| ||||||||||||  |||||| ||||| |||||| | ||| | |||||||||| |||| || ||||| |||||||| |||||| |||||    
T  9700069 acatgtccataagctgttttcaccttattttcataagctctcttgaataacatatgaaaacagcttataa-tttatttgaaaacaatttgaccttatt 9699973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 12361260 - 12361168
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactt 401  Q
    |||| |||| ||||||||||||  |||||||||| | |||||  | ||| |||||||||||| ||| | || ||||||||||||| ||||||||    
T  12361260 acatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagctt-atagcttatatgaaaacaatttgactt 12361168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 13561342 - 13561410
Alignment:
Q  336 ttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||| ||||| |  ||||||| ||||||||| ||| || |||||||||||||| ||||||||||||    
T  13561342 ttccataagctctcaatgatagcttgtgaaaacaagttataa-tttatatgaaaacaatttgactttatt 13561410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 374
Target Start/End: Original strand, 14926901 - 14927037
Alignment:
Q  238 tgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttgtaacatatccacaagctgttttcagttta-tt 336  Q
    ||||||||| |||||||||||  ||||||||   ||||| |||||  || |||||||| |||||||||| || | ||   ||||||||||||| | | ||    
T  14926901 tgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagcttgtgacgtgtctgtaagctgttttcagctaattt 14927000  T
Q  337 tccataaactctctagcatagcttatgaaaacaactta 374  Q
    | |||||| ||||||| ||||||| ||||||| |||||    
T  14927001 tgcataaa-tctctaggatagcttctgaaaacgactta 14927037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 492
Target Start/End: Original strand, 32157306 - 32157383
Alignment:
Q  415 aaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaatag 492  Q
    ||||||||||||||||||| || | |||||||| ||||||||| || || |  ||||||||| || || |||||||||    
T  32157306 aaaaatagcttatatataaacaattatatgataggtgcttatattacaagcgtttaattaagttgtttatccaaatag 32157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 41620396 - 41620437
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataa 448  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  41620396 tttgttacaaaaataacttatatataagcacttgtatgataa 41620437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 42197196 - 42197151
Alignment:
Q  332 ttatttccataaactctctagcatagcttatgaaaacaacttaaaa 377  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||    
T  42197196 ttatttccataaactcttgagtataacttatgaaaacaacttaaaa 42197151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 356 - 503
Target Start/End: Original strand, 9527140 - 9527291
Alignment:
Q  356 agcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt-----gtttgttacaaaaatagcttatatataagcactaatatgataagt 450  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||      ||||||| | | ||||| ||||||||||||||  ||||||||||    
T  9527140 agcttatgaaaacaacttata-gtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataagt 9527238  T
Q  451 gcttataatataaacacttaattaagatgattgtccaaatagagtctaaattg 503  Q
    | ||||| ||||  ||||||||  || || || |||||| | |||||||||||    
T  9527239 gtttatactataggcacttaatccagctgtttatccaaacatagtctaaattg 9527291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 37064236 - 37064328
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttat--gaaaacaacttaaaagtttatatgaaaacagtttgactttattgtttgtt 412  Q
    |||||| ||||||||| ||||| |||||||  |||||||||  ||||||||||||| |||||||||||||||| || ||||||||| ||||||    
T  37064236 tgttttaagtttattttcataagctctctatgatagcttatatgaaaacaacttaagagtttatatgaaaacaattcgactttattttttgtt 37064328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 39506014 - 39505929
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| ||||||| |||||||||||||||||| || |||||||||||||||||||| || | ||||||| ||||||||||||| ||||    
T  39506014 aagctattttcagcttatttccataaactctccagaatagcttatgaaaacaactt-aatgcttatatg-aaacagtttgactctatt 39505929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 323 - 440
Target Start/End: Complemental strand, 24909717 - 24909601
Alignment:
Q  323 gttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgtttgttacaaaaatag 422  Q
    ||||||||  |||||||| || ||||| |  ||| ||||||||||||||||| | | ||||||||||| | |||||||||| | ||||||| | ||||||    
T  24909717 gttttcagcatatttccacaagctctccacaatatcttatgaaaacaacttata-gcttatatgaaaataatttgactttactttttgttaaagaaatag 24909619  T
Q  423 cttatatataagcactaa 440  Q
    |||||| |||||||||||    
T  24909618 cttatacataagcactaa 24909601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 24363603 - 24363669
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| |||| ||| ||||||||| |||||||||||| ||||| || |||||||||||||||||||||    
T  24363603 acatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaactta 24363669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 28340427 - 28340494
Alignment:
Q  337 tccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||| ||||| |||||||||| ||||||||||||| ||  ||| ||||||||||||||||||||||    
T  28340427 tccataagctctccagcatagcttctgaaaacaacttataa-cttacatgaaaacagtttgactttatt 28340494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 17989073 - 17989121
Alignment:
Q  356 agcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  17989073 agcttatgaaaacaaattata-gtttatatgaaaacagtttgactttatt 17989121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 323 - 440
Target Start/End: Complemental strand, 24895409 - 24895294
Alignment:
Q  323 gttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgtttgttacaaaaatag 422  Q
    ||||||||| ||||||||||| ||||| |  ||| ||| |||||||||||| | || ||||||||||| | |||||||||| | |||||||   ||||||    
T  24895409 gttttcagtatatttccataagctctccacaatatcttgtgaaaacaactt-atagcttatatgaaaataatttgactttact-tttgttaacgaaatag 24895312  T
Q  423 cttatatataagcactaa 440  Q
    |||||| |||| ||||||    
T  24895311 cttatagataatcactaa 24895294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 29363582 - 29363490
Alignment:
Q  312 atccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| || |||||||| | |||||||||||| ||||| || ||| ||||||| |||| |||| || |  ||||||||||||||||||||||||    
T  29363582 atccaaaaactgttttcgggttatttccataagctctccaggataacttatgataacagcttataacta-atatgaaaacagtttgactttatt 29363490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 44615106 - 44615167
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||| |||||||||||||||||  |||||||||||||||||| ||  || ||||||||||||    
T  44615106 acatgtccacaagctgttttcacgttatttccataaactctcaaggctaacttatgaaaaca 44615167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 10190838 - 10190767
Alignment:
Q  333 tatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||| || |  || |||| |||||||||||| ||| | ||||||||||||||||||||||||||||    
T  10190838 tatttccataagcttttaagaatagtttatgaaaacaatttaca-gtttatatgaaaacagtttgactttatt 10190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 38010772 - 38010689
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgacttt 402  Q
    |||||||||| || ||||||||||||  ||||||| |||| ||||||||||| ||| | || ||||||||||||| |||| ||||    
T  38010772 aagctgtttttagcttatttccataagttctctaggatagattatgaaaacagctt-atagcttatatgaaaacaatttggcttt 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 369
Target Start/End: Complemental strand, 529521 - 529382
Alignment:
Q  230 taagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttgtaacatatccacaagctgttttca 329  Q
    |||||||||| |||||| |||||||||||| |||| |||   |||||||||||  ||  || ||||||||| ||| | |||  | || ||||||||||||    
T  529521 taagggtctgattggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaacttatgacaagttcataagctgttttca 529422  T
Q  330 gtttatttccataaactctctagcatagcttatgaaaaca 369  Q
       ||||| ||||| ||||| |  ||||||||||||||||    
T  529421 acatattttcataagctctccaagatagcttatgaaaaca 529382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 1710799 - 1710744
Alignment:
Q  307 aacatatccacaagctgttttcagtttatttccataaactctctagcatagcttat 362  Q
    ||||| |||| || |||||||||| |||||||||||| |||||||| |||||||||    
T  1710799 aacatctccataaactgttttcagcttatttccataacctctctagaatagcttat 1710744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 30535715 - 30535652
Alignment:
Q  237 ctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggaga 300  Q
    ||||||| || |||||||||||||| ||||||  |||||||||||| ||| ||||||| |||||    
T  30535715 ctgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttttggaga 30535652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 2825249 - 2825299
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||||| ||||||||||||  ||||||| ||||||| |||||||||||||    
T  2825249 ttttcagcttatttccataagttctctaggatagcttgtgaaaacaactta 2825299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 10079270 - 10079324
Alignment:
Q  250 cttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    |||||||||| |||||||||| |||||||||||| ||   |||||||||||||||    
T  10079270 cttatttgagcttatttacgagcataaacacttatgaggttgtttgggagagctt 10079324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 23721555 - 23721478
Alignment:
Q  327 tcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| |||||||||||| | | | || ||||||||| ||||||||||| | ||||| ||||||| ||||||||||||||    
T  23721555 tcagcttatttccataagcgcacaaggatagcttataaaaacaacttata-gtttaaatgaaaatagtttgactttatt 23721478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 4966219 - 4966158
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| ||| |||||||||||||||||||||| ||||  || || ||||||||||||| ||||    
T  4966219 tccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagctta 4966158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 26935569 - 26935618
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaa 367  Q
    ||||||||||||| |||||||||||| |||| ||| |||| |||||||||    
T  26935569 aagctgttttcagcttatttccataagctctttagaatagattatgaaaa 26935618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 39345475 - 39345422
Alignment:
Q  380 ttatatgaaaacagtttgactttattgtttgttacaaaaatagcttatatataa 433  Q
    ||||||||||||||||||||| |||  ||||||||  |||||||||||| ||||    
T  39345475 ttatatgaaaacagtttgactctatcttttgttactgaaatagcttatacataa 39345422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 44151482 - 44151578
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| |||| ||| ||||||||| |||||||||||| || |  |  |||| ||||||||||||||| | || ||||||| ||||||||| ||||||||    
T  44151482 acatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaactt-atagcttatatggaaacagttttactttatt 44151578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 45078258 - 45078217
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataa 448  Q
    ||||||| |||||||||||||| ||||||||| |||||||||    
T  45078258 tttgttataaaaatagcttatacataagcacttatatgataa 45078217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 6966 - 6859
Alignment:
Q  233 gggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttgtaacatatccacaagctgttttcagtt 332  Q
    |||||||||| ||| ||||||||||||||||| ||| | |||||||||||  || ||||||||||||||||| | |||| ||||  || |||||| ||||    
T  6966 gggtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtccattagttgttttgagtt 6867  T
Q  333 tatttcca 340  Q
    ||||||||    
T  6866 tatttcca 6859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 322 - 401
Target Start/End: Complemental strand, 16889789 - 16889711
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactt 401  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||| | || || ||| |||||||||||||||    
T  16889789 tgttttcagattatttccataaactctctagcatagcttatgaaaacagctt-atagcttctataaaaacagtttgactt 16889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 28586768 - 28586864
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||  ||||||||||||| ||||||| |||| |||||||| ||||||  | |||||| |||| || |||||||||||||||||||||||||||    
T  28586768 acatatccgtaagctgttttcagcttatttcgataagctctctaggatagctcgtcaaaacagcttataa-tttatatgaaaacagtttgactttatt 28586864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 40205068 - 40205156
Alignment:
Q  300 agcttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaac 391  Q
    ||||| |||||| |||| || |||||||||| ||||||| |||| ||||| || ||||||||||||||||||||   |||||||||||||||    
T  40205068 agcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaactt---agtttatatgaaaac 40205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 34198575 - 34198528
Alignment:
Q  235 gtctgtttggatcgacttatttgagtttatttacgaacataaacactt 282  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  34198575 gtctgtttggattgacttatttgagtttatttactaacataaacactt 34198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 407 - 476
Target Start/End: Complemental strand, 33961668 - 33961599
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaag 476  Q
    ||||||| |||| || |||||| | || |||| |||||||||||||||||| ||||||||||||||||||    
T  33961668 tttgttataaaagtaccttatacaaaaacacttatatgataagtgcttatactataaacacttaattaag 33961599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 37588372 - 37588444
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaac 391  Q
    ||||||||||||| |||||||||||| ||||| || ||| |||||||||||||||| | || ||||||||||||    
T  37588372 aagctgttttcagcttatttccataagctctccagaataacttatgaaaacaactt-atagcttatatgaaaac 37588444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 489
Target Start/End: Complemental strand, 26516285 - 26516181
Alignment:
Q  385 tgaaaacagtttgactttattgtttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgt 484  Q
    |||||||||||| | |||||  ||||||  | |||||||||||| ||||||||| |||||||||| ||||||  ||||| | |||||||||| || || |    
T  26516285 tgaaaacagttttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttat 26516186  T
Q  485 ccaaa 489  Q
    |||||    
T  26516185 ccaaa 26516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 29281159 - 29281088
Alignment:
Q  377 agtttatatgaaaacagtttgactttattgtttgttacaaaaatagcttatatataagcactaatatgataag 449  Q
    ||||||||||||||||  ||||||||||| ||||||| |||||||| ||||||||||| ||| ||| ||||||    
T  29281159 agtttatatgaaaacaagttgactttatt-tttgttataaaaatagtttatatataagtacttatacgataag 29281088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 449
Target Start/End: Complemental strand, 11684472 - 11684346
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgact---ttattgtttgttac 414  Q
    ||||||||||||  |||||||| ||| ||||| ||||||||||||||||| | ||||        |||||||||||||| |||   ||||  |||||||     
T  11684472 aagctgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagctta--------tatgaaaacagtttcactattttatattttgttat 11684381  T
Q  415 aaaaatagcttatatataagcactaatatgataag 449  Q
    |||||||||||||| || |||||| ||||||||||    
T  11684380 aaaaatagcttatacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 14295564 - 14295478
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||| ||| ||| | || ||||| || |||||||| ||||||| |||| | | ||||||||||||||||||||||||||    
T  14295564 aagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttata-gcttatatgaaaacagtttgactttatt 14295478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 310 - 474
Target Start/End: Complemental strand, 29588945 - 29588778
Alignment:
Q  310 atatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtt----tgactttatt 405  Q
    ||||||| | ||| ||||||| |||||||||||||||||  | ||||||||| |||||| |||| | || ||||||||||||| ||    | | |||||     
T  29588945 atatccataggctattttcagcttatttccataaactcttcaacatagcttacgaaaac-actttatagcttatatgaaaacaattttcattattttata 29588847  T
Q  406 gtttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaatta 474  Q
     ||||||| | |||||||||||| ||||||||| |||| | ||||| ||||  ||||| | ||||||||    
T  29588846 ttttgttatagaaatagcttatacataagcacttatataaaaagtgtttatgctataagcgcttaatta 29588778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 324 - 438
Target Start/End: Original strand, 31030148 - 31030264
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattg---tttgttacaaaaat 420  Q
    ||||||| |||||||||||| ||||| || | |||||| |||||| ||||| | | |||||||| ||||  |||||||||||    ||||||| ||||||    
T  31030148 ttttcagcttatttccataagctctccaggacagcttaggaaaactacttata-gcttatatgataacaacttgactttatttaaatttgttataaaaat 31030246  T
Q  421 agcttatatataagcact 438  Q
    |||||||| |||||||||    
T  31030247 agcttatacataagcact 31030264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 36318832 - 36318773
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaa 377  Q
    ||||||||||||| |||||| |||||| |||| |  ||||||||||||||||||||||||    
T  36318832 aagctgttttcagcttatttacataaattctccaagatagcttatgaaaacaacttaaaa 36318773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 15074751 - 15074817
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| |||| ||||||||||||| |||||||||||| || || || ||| |||||||||||||||||    
T  15074751 acatgtccataagctgttttcagcttatttccataagctttccagtataacttatgaaaacaactta 15074817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 37526211 - 37526283
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaac 391  Q
    ||||||||||||| |||||||||||| ||||| || | | |||||||||||||||| | || ||||||||||||    
T  37526211 aagctgttttcagcttatttccataagctctccagaacaacttatgaaaacaactt-atagcttatatgaaaac 37526283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 8985716 - 8985633
Alignment:
Q  321 ctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||||| || ||||||||| |||| ||| |||||||||||||| | |||  ||  ||||||||||| ||||||||||||||    
T  8985716 ctgttttcagcttctttccataagctctataggatagcttatgaaaatagcttgcaa-attatatgaaaatagtttgactttatt 8985633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 455
Target Start/End: Complemental strand, 36539798 - 36539663
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt-----gtttgttacaaaa 418  Q
    ||||||||||||| ||| || ||||  || ||| ||||| ||||||||||| | | |||||||||||||| |||||||||||      |||| || | ||    
T  36539798 ttttcagtttattaccaaaagctcttcagaataacttataaaaacaacttata-gcttatatgaaaacaggttgactttattttatcttttgataaacaa 36539700  T
Q  419 atagcttatatataagcactaatatgataagtgctta 455  Q
    |||||||| | ||||||||| ||||||||||| ||||    
T  36539699 atagcttacacataagcacttatatgataagttctta 36539663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 37611227 - 37611279
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaa 370  Q
    ||||||||||||| |||||||||||| ||||| |  |||||||||||||||||    
T  37611227 aagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 37787957 - 37788009
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaa 370  Q
    ||||||||||||| |||||||||||| ||||| |  |||||||||||||||||    
T  37787957 aagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 10272447 - 10272525
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactt 401  Q
    ||||||||| |||||| ||||||||||| |  || ||||||||||||||||| | || ||||| ||||||| ||||||||    
T  10272447 tgttttcagcttattttcataaactctccaagatggcttatgaaaacaactt-atagcttatacgaaaacaatttgactt 10272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 12074355 - 12074394
Alignment:
Q  228 actaagggtctgtttggatcgacttatttgagtttattta 267  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  12074355 actaaaggtctgtttggattgacttatttgagtttattta 12074394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 15003530 - 15003612
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||  ||||||||||||| |||||| | ||||||||||||||| |||| | || ||||||||| | ||||||| ||||||    
T  15003530 tgttttcgatttatttccataagctctcttggatagcttatgaaaaccactt-atagcttatatgaagagagtttgattttatt 15003612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 17368729 - 17368678
Alignment:
Q  323 gttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||||| |||||||||||| ||||| |  |||||||||||||||||||||    
T  17368729 gttttcagcttatttccataacctctccaagatagcttatgaaaacaactta 17368678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 20982207 - 20982322
Alignment:
Q  379 tttatatgaaaacagtttgactttattgt-----ttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaatt 473  Q
    ||||||||||||| | ||||||||||| |     |||||| | |||||||||||| ||||||||| ||||||||||  |||||  ||||| ||||||||     
T  20982207 tttatatgaaaacgggttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatg 20982306  T
Q  474 aagatgattgtccaaa 489  Q
    ||| || || ||||||    
T  20982307 aagttgtttatccaaa 20982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 36638805 - 36638754
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    ||||| ||||||| |||||||||||| |||||||| ||| ||||||||||||    
T  36638805 aagcttttttcagcttatttccataagctctctaggataacttatgaaaaca 36638754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 41277398 - 41277448
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||||||||||  || || ||||||||||||||||||||||||    
T  41277398 atagcttatgaaaacaacttttaactt-atatgaaaacagtttgactttatt 41277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 449
Target Start/End: Complemental strand, 1961957 - 1961915
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataag 449  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||    
T  1961957 tttgttataaaaatagcttatatataggcacttatatgataag 1961915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 6738522 - 6738580
Alignment:
Q  417 aaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaa 475  Q
    |||||||||||| ||||| ||| |||||||||||| ||||  ||||||| |||||||||    
T  6738522 aaatagcttatacataagtacttatatgataagtgtttatgctataaactcttaattaa 6738580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 40534338 - 40534284
Alignment:
Q  250 cttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    |||||||||||||||||||  ||||||||||||  || ||||||| |||||||||    
T  40534338 cttatttgagtttatttactgacataaacacttgtgatactgtttaggagagctt 40534284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 1084068 - 1084121
Alignment:
Q  248 gacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagag 301  Q
    |||||||||||||||||||||  |||||| |||||  ||||||||||| |||||    
T  1084068 gacttatttgagtttatttactgacataagcacttgtgaaactgtttgagagag 1084121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 2468499 - 2468406
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactt 401  Q
    |||| |||| |||||||||| || ||| |||||||||||||  || ||||||||| |||| ||||| | || || ||||||||||  |||||||    
T  2468499 acatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 2468406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 456
Target Start/End: Complemental strand, 10391318 - 10391269
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttat 456  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||| ||||    
T  10391318 tttgttataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 19138733 - 19138816
Alignment:
Q  322 tgttttcagtttatttccataaactctc--tagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttat 404  Q
    ||||||||| |||||||||||| |||||  ||  |||||||||||||||||||| | || |||| |||||||| ||||| |||||    
T  19138733 tgttttcagcttatttccataagctctccatataatagcttatgaaaacaactt-atagcttatctgaaaacaatttgaatttat 19138816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 19369371 - 19369295
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtt 395  Q
    |||||||||||| |||||||| |||| |||||| | | || |||||||| || ||| | |||||||||||||||||||    
T  19369371 aagctgttttcaatttatttctataagctctctgggaaagtttatgaaaccagctt-atagtttatatgaaaacagtt 19369295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 30653388 - 30653437
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaa 367  Q
    ||||||||||||| |||||||||||| || ||||| | ||||||||||||    
T  30653388 aagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaa 30653437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 30257741 - 30257655
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||| ||||||| |||| | ||| || |||| ||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  30257741 aagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaactt-aaagcttatatggaaacagtttgactttatt 30257655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 4215441 - 4215344
Alignment:
Q  307 aacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||||| |  |||||||||  |||||| ||||||||||| || ||| |||| |||||| ||| | | ||||||||||||||||||||||||||||    
T  4215441 aacatatccatacactgttttcaccttatttgcataaactctcaaggataacttacgaaaacgactcata-gtttatatgaaaacagtttgactttatt 4215344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 7218083 - 7218172
Alignment:
Q  315 cacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||||||||||  |||||| |||||  |||| || |||| ||||||||||||||| | || ||||||||||||| ||||||||||||    
T  7218083 cacaagctgttttcaacttattttcataagttctccaggataggttatgaaaacaactt-atagcttatatgaaaacaatttgactttatt 7218172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 5157221 - 5157157
Alignment:
Q  240 tttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    ||||||| |||||||||||  |||| |||| ||||||||||||  ||||||||||||||||||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagctt 5157157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 25479635 - 25479583
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  25479635 tgttttcagcttattttcataagctctctaggatagcttatgaaaacaactta 25479583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 441
Target Start/End: Complemental strand, 6279467 - 6279335
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgt 407  Q
    |||| |||| ||| |||||||||  ||||||||||| |||||||| ||||||||||||||  | || |||| ||||| ||||||| ||||  |||||| |    
T  6279467 acatgtccataagttgttttcagcgtatttccataagctctctaggatagcttatgaaaa-tagtttaaagcttatacgaaaacaatttgtttttatttt 6279369  T
Q  408 ttgttacaaaaatagcttatatataagcactaat 441  Q
     | |   |||| ||||||||| ||||||||||||    
T  6279368 atctcctaaaattagcttatacataagcactaat 6279335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 15361767 - 15361687
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgacttta 403  Q
    ||||||||| ||| |||||||||||||| || ||| |||||||||||| ||| | || ||||||||||| | ||||||||||    
T  15361767 tgttttcagcttaattccataaactctcaagaatatcttatgaaaacagctt-atagcttatatgaaaataatttgacttta 15361687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 473
Target Start/End: Complemental strand, 4200287 - 4200128
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgt-----ttgtt 412  Q
    |||||||||| || |||||| ||||| | ||| || ||| |||| ||||||||  || | | |||||||||||||  ||||||||||| |     |||||    
T  4200287 aagctgttttaagcttattttcataagccctccaggatatcttacgaaaacaatatata-gcttatatgaaaacaacttgactttattttatcttttgtt 4200189  T
Q  413 acaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaatt 473  Q
    | ||||||| ||||||||||| |||| | |||||||||||||||  ||||  |||||||||    
T  4200188 ataaaaataacttatatataaacacttagatgataagtgcttatgctatacgcacttaatt 4200128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 397
Target Start/End: Original strand, 12564881 - 12564964
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttg 397  Q
    |||| ||||||||||||| |||||||| ||| | ||  |  |||||||||||||||||||| | || ||||||||||||||||||    
T  12564881 tccataagctgttttcagcttatttccgtaagcactaaaagatagcttatgaaaacaactt-atagcttatatgaaaacagtttg 12564964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 51929787 - 51929843
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||| |||| | |||||||||||| |||||||| |||||||||||||||| ||||    
T  51929787 aagctgatttcggcttatttccataagctctctagaatagcttatgaaaacagctta 51929843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 3924678 - 3924604
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttg 397  Q
    ||||||| | |||||||||||||||||  || ||||||||| |||||||| ||| || ||||| ||||||||||||    
T  3924678 tgttttcggcttatttccataaactcttcaggatagcttataaaaacaac-taatagattatacgaaaacagtttg 3924604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 19462814 - 19462864
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||||||| ||| | |||||||||||||| |||||||||||||    
T  19462814 atagcttatgaaaacaatttaca-gtttatatgaaaactgtttgactttatt 19462864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 25006082 - 25006132
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||||||||||| | | ||||||||||||| ||||||||||||    
T  25006082 atagcttatgaaaacaacttata-gcttatatgaaaacaatttgactttatt 25006132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 28467584 - 28467521
Alignment:
Q  238 tgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagag 301  Q
    ||||||||| ||||||||||||||||||||| | ||| | |||||| || ||| ||||||||||    
T  28467584 tgtttggattgacttatttgagtttatttactagcattagcacttatgagactatttgggagag 28467521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 40751181 - 40751220
Alignment:
Q  357 gcttatgaaaacaacttaaaagtttatatgaaaacagttt 396  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  40751181 gcttatgaaaacaacttaatagtttatatgaaaatagttt 40751220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 405
Target Start/End: Complemental strand, 45205122 - 45205040
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||| |||||||||| ||||||  |  ||||||||||||||||||||   || ||||||| ||| ||||||||||||||    
T  45205122 tgttttcagcttatttccatgaactctacatgatagcttatgaaaacaactt-ctagcttatatggaaatagtttgactttatt 45205040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 332 - 374
Target Start/End: Complemental strand, 5924099 - 5924057
Alignment:
Q  332 ttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||||||||| |||||||| ||| |||||||||||||||||    
T  5924099 ttatttccataagctctctaggataacttatgaaaacaactta 5924057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 8130458 - 8130409
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttat 404  Q
    ||||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  8130458 atagcttatgaaaacaacttata-gcttatgtgaaaacagtttgactttat 8130409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 33723398 - 33723479
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttat 404  Q
    ||||||||| |||||||||||| || |  ||  |||||||||||||||  || | |||||||||||||||| |||||||||||    
T  33723398 tgttttcagcttatttccataagctttacagggtagcttatgaaaacag-ttcatagtttatatgaaaacaatttgactttat 33723479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 49560664 - 49560746
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaagatgattgtccaaa 489  Q
    ||||||| | |||||  ||||||||||||||| ||||||| ||||| |||  ||||||||||||| |||| || || ||||||    
T  49560664 tttgttatataaatatattatatataagcacttatatgattagtgcatatgctataaacacttaagtaagttgtttatccaaa 49560746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 50319311 - 50319273
Alignment:
Q  335 tttccataaactctctagcatagcttatgaaaacaactt 373  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  50319311 tttccataagctctctaggatagcttatgaaaacaactt 50319273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 5756735 - 5756783
Alignment:
Q  355 tagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttat 404  Q
    ||||||| |||||||||||| || |||||||||||||||||| |||||||    
T  5756735 tagcttacgaaaacaacttataa-tttatatgaaaacagtttaactttat 5756783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 17269294 - 17269222
Alignment:
Q  332 ttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| || ||| ||||| || |||||||||||||||||||| |  | ||||||||||||| ||||||||||||    
T  17269294 ttattaccgtaagctctccaggatagcttatgaaaacaactt-attgcttatatgaaaacaatttgactttatt 17269222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 27738206 - 27738278
Alignment:
Q  332 ttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| ||||||| |||||  | ||||||||||||||||| ||| | | ||||||||||||| ||||||||||||    
T  27738206 ttatatccataagctctcctgtatagcttatgaaaacaaattata-gcttatatgaaaacaatttgactttatt 27738278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 405
Target Start/End: Original strand, 28467326 - 28467405
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||| || |||| |||| ||||||||| |||||||||||||||||||   || ||||||||||| | ||||||||||||    
T  28467326 ttttcagcttttttcaataagctctctagc-tagcttatgaaaacaactt-gtagcttatatgaaaataatttgactttatt 28467405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 46504322 - 46504387
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaat 472  Q
    ||||||| |||||||| ||||| | || |||| |||||||||| ||||||  ||||||||||||||    
T  46504322 tttgttataaaaatagtttatagacaaacacttatatgataagagcttatgctataaacacttaat 46504387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 47598428 - 47598489
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| ||| ||||||||| || || |||||| ||||| || |||||||||||||||||||||    
T  47598428 tccataagttgttttcagcttgttgccataagctctccaggatagcttatgaaaacaactta 47598489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 476
Target Start/End: Complemental strand, 31461643 - 31461574
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaag 476  Q
    ||||||| | |||||||||||| ||||||||| |||  ||||||||||||||||||| ||||||||||||    
T  31461643 tttgttatagaaatagcttatacataagcacttatacaataagtgcttataatataagcacttaattaag 31461574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 2117461 - 2117378
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgacttt 402  Q
    |||||||||| || ||||||| |||| |||||||| ||| |||||||||||||||| | || ||||||||||| |||||||||||    
T  2117461 aagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaactt-atagattatatgaaaatagtttgacttt 2117378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 3217299 - 3217360
Alignment:
Q  411 ttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaat 472  Q
    |||||||||||||||||| ||||||||| |||||||||  ||||||| ||||| ||||||||    
T  3217299 ttacaaaaatagcttatacataagcacttatatgataatcgcttatactataagcacttaat 3217360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 281864 - 281946
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||| |||||||||| | |||||||| |||||||||||| ||| ||| | || |||||||||||||  |||||||||||    
T  281864 tgttttcagcttatttccatgagctctctaggatagcttatgaacacagctt-atagcttatatgaaaacaagttgactttatt 281946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 405
Target Start/End: Complemental strand, 4006766 - 4006686
Alignment:
Q  324 ttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||| |||||| ||||| |||||  | |||||||||||||||||||| | || |||||| |||||| ||||||||||||    
T  4006766 ttttcagcttattttcataacctctcagggatagcttatgaaaacaactt-atagcttatataaaaacaatttgactttatt 4006686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 5564110 - 5564194
Alignment:
Q  288 actgtttgggagagcttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaact 372  Q
    ||||||||||||| ||| | |||| |||  ||||||||||||| |||||| ||||||||||  |  | |||||||||||||||||    
T  5564110 actgtttgggagatcttatgacatgtccgaaagctgttttcagcttatttgcataaactcttcaagacagcttatgaaaacaact 5564194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 20671878 - 20671963
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||| ||| ||||| || |||||||  |||| |||||||||||| ||||| | ||||| ||||||| ||||||||||||    
T  20671878 aagctgttttcagcttacttcca-aagctctctatgatagtttatgaaaacaatttaaa-gcttatacgaaaacaatttgactttatt 20671963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 34939798 - 34939755
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaa 365  Q
    ||||||||| |||||||||||||||||| || ||||||||||||    
T  34939798 tgttttcagcttatttccataaactctccaggatagcttatgaa 34939755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 4420701 - 4420617
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||| |||||||||||| ||||| |  |||||||| ||||| |||||   || |||||  |||| ||||||||||||||    
T  4420701 aagctgttttcagcttatttccataagctctccaagatagcttaggaaaataactt---agcttatacaaaaatagtttgactttatt 4420617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 7931805 - 7931854
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaac 371  Q
    ||||||||| |||||||||||| |||| ||| ||||||| ||||||||||    
T  7931805 tgttttcagcttatttccataagctctataggatagcttgtgaaaacaac 7931854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 448
Target Start/End: Complemental strand, 8010415 - 8010281
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttattgt----ttgtta 413  Q
    ||||| ||||||||||||||| ||||  |||| || ||| ||||| |||||| |||| || || | ||||||  || ||||||||||| |    ||||||    
T  8010415 aagctattttcagtttatttctataagttctccaggataacttattaaaacagcttataacttaaaatgaaagtagattgactttattttattgttgtta 8010316  T
Q  414 caaaaatagcttatatataagcactaatatgataa 448  Q
     | ||||||||||||  |||||||| |||||||||    
T  8010315 tagaaatagcttatacctaagcacttatatgataa 8010281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 8420199 - 8420295
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| |||||||||| ||||||  |||||||||||| ||||| |  |||||||| || |||| ||| | | ||||||| || ||||||||||||||||    
T  8420199 acatgtccacaagctattttcaacttatttccataagctctccattatagcttacgagaacagctt-atattttatataaacacagtttgactttatt 8420295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 19275638 - 19275699
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||| ||||||||||| |||| |||||||||||||| ||||  |  ||||||||||||||||    
T  19275638 acatgtccacaagctgatttcggtttatttccataagctcttcatgatagcttatgaaaaca 19275699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 27857496 - 27857443
Alignment:
Q  251 ttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    |||||||||||||| |||  ||||| ||||||  ||||||||||||||||||||    
T  27857496 ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagctt 27857443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 31668790 - 31668839
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttat 456  Q
    ||||||| | |||||||||||| ||||||||| ||||||||| |||||||    
T  31668790 tttgttatagaaatagcttatacataagcacttatatgataattgcttat 31668839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 476
Target Start/End: Original strand, 33068666 - 33068735
Alignment:
Q  407 tttgttacaaaaatagcttatatataagcactaatatgataagtgcttataatataaacacttaattaag 476  Q
    ||||||| | ||||| |||||| ||||||| | || ||||||| ||||||  ||||||||||||||||||    
T  33068666 tttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataaacacttaattaag 33068735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 22214661 - 22214744
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaaca 392  Q
    |||| |||| ||||||||||||| |||||||| |||  ||||||| |||||||||||||||||||| | || |||||||||||||    
T  22214661 acatgtccataagctgttttcagcttatttccgtaatgtctctaggatagcttatgaaaacaactt-ataggttatatgaaaaca 22214744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 36646389 - 36646480
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| ||||||||||||  ||||||| ||||||||||||| ||||||||||||||||| ||| ||  ||||||||||||| ||  ||||||||    
T  36646389 tccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataa-cttatatgaaaacaattatactttatt 36646480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 369
Target Start/End: Original strand, 13709755 - 13709886
Alignment:
Q  238 tgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttgtaacatatccacaagctgttttcagtttattt 337  Q
    |||||| |||||||||||||| ||||| |||    |||| |||||  || ||| ||| |||||| || | |||  |||| ||| ||||||||||||||||    
T  13709755 tgtttgcatcgacttatttgaatttatctactgggataagcacttgtgagactatttaggagagtttatgacaagtccataagttgttttcagtttattt 13709854  T
Q  338 ccataaactctctagcatagcttatgaaaaca 369  Q
    | |||||||||| || ||||||||||||||||    
T  13709855 caataaactctccaggatagcttatgaaaaca 13709886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 31403234 - 31403153
Alignment:
Q  289 ctgtttgggagagcttgtaacatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaa 370  Q
    ||||||| |||||||| |  ||| |||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||    
T  31403234 ctgtttgagagagcttatgtcatgtccataagctgttttcagcttattaccatgaactctctaggatagcttatcaaaacaa 31403153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 24887298 - 24887381
Alignment:
Q  321 ctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||||||| ||||| |||||| ||||| || |||||||||||||||| |||   || ||||||||| ||||||||||||||||    
T  24887298 ctgttttcagcttattcccataagctctccaggatagcttatgaaaacagctt-ttagcttatatgaatacagtttgactttatt 24887381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 14548735 - 14548805
Alignment:
Q  320 gctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaac 391  Q
    ||||||||||| |||||||||||| ||||| || ||| |||||||||||||||| | || ||||||||||||    
T  14548735 gctgttttcagcttatttccataagctctccagaataacttatgaaaacaactt-atagcttatatgaaaac 14548805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 30923910 - 30923961
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    ||||||||||||| ||||||| ||||||||||||| |||| |||||||||||    
T  30923910 aagctgttttcagcttatttctataaactctctaggataggttatgaaaaca 30923961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 41452581 - 41452495
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||  ||||||||| ||  |||| || |||||||||||||||| |||| ||  | ||||||||||||||||||||||||    
T  41452581 aagctgttttcaccttatttccacaacttctccaggatagcttatgaaaacagcttacaa-ctaatatgaaaacagtttgactttatt 41452495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 237460 - 237399
Alignment:
Q  313 tccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||| ||||||||||||| |||||||| ||| |||| ||| ||| |||||||||||||||||    
T  237460 tccataagctgttttcagcttatttccgtaagctctataggataacttatgaaaacaactta 237399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 1816639 - 1816555
Alignment:
Q  320 gctgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||| ||||||  |||| ||||| || ||||||||||||||||||||| |  || |||  |||||||||||||||||||    
T  1816639 gctgttttcagcttattttgataagctctccagtatagcttatgaaaacaacttatatctt-atacaaaaacagtttgactttatt 1816555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 228 - 473
Target Start/End: Original strand, 12923250 - 12923496
Alignment:
Q  228 actaagggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttgtaacatatccacaagctgtttt 327  Q
    ||||||||  ||||| ||| || |||||||||||||| ||| ||||||| |||    || ||||||||||||||||| | |||| |||| ||| ||||||    
T  12923250 actaagggcatgttttgattgagttatttgagtttatctactaacataagcacc---gagactgtttgggagagcttatgacatgtccataagttgtttt 12923346  T
Q  328 cagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt-----gtttgttacaaaaatag 422  Q
    ||| ||||||  | ||  | ||||   || |||| ||||||||||| | || ||||| |||| |||||||||||||||      ||| |||||  |||||    
T  12923347 cagcttatttatagaagttttctaaggtaacttaggaaaacaactt-atagcttataagaaagcagtttgactttattttatcttttattacagcaatag 12923445  T
Q  423 cttatatataagcactaatatgataagtgcttataatataaacacttaatt 473  Q
    |||||| | ||||||| |||| | ||| | ||| ||||||||||| |||||    
T  12923446 cttatacacaagcacttatatcacaaggggttagaatataaacacataatt 12923496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 30322032 - 30322088
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    ||||||| |||| ||||||||||||| |||| ||| ||| |||||||||||||||||    
T  30322032 aagctgtgttcaatttatttccataagctctttaggataacttatgaaaacaactta 30322088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 40122769 - 40122850
Alignment:
Q  322 tgttttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||||| || |||||||||| |||| | ||| ||||||||| ||||||||||| |  ||  |||||||||||||||||||||||    
T  40122769 tgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt--tatgaaaacagtttgactttatt 40122850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 659934 - 659973
Alignment:
Q  418 aatagcttatatataagcactaatatgataagtgcttata 457  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  659934 aatagcttatatataagcatttatatgataagtgcttata 659973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 374
Target Start/End: Complemental strand, 21367728 - 21367669
Alignment:
Q  315 cacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||||||||||||| |||||| |||||  |||| |  |||||||||||||||||||||    
T  21367728 cacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaactta 21367669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 23315676 - 23315598
Alignment:
Q  326 ttcagtttatttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| |||||||||||| |||| ||| |||||||||| ||||| ||| | ||  |||||||||||| ||||||||||||    
T  23315676 ttcagcttatttccataagctctttagaatagcttatggaaacatctt-atagcctatatgaaaacaatttgactttatt 23315598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 28306180 - 28306130
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||||||||||||||||||  || || ||||||||||||||||||||||||    
T  28306180 atagcttatgaaaacaacttgtaactt-atatgaaaacagtttgactttatt 28306130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 28842971 - 28843018
Alignment:
Q  416 aaaatagcttatatataagcactaatatgataagtgcttataatataa 463  Q
    ||||||||||||| ||||||||| |||||||||| |||||| ||||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgcttatgatataa 28843018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 49772766 - 49772817
Alignment:
Q  400 tttattgtttgttacaaaaatagcttatatataagcactaatatgataagtg 451  Q
    |||||| ||| |||||||||||||||||| |||| |||| ||||||||||||    
T  49772766 tttattttttattacaaaaatagcttatacataaacacttatatgataagtg 49772817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 49845458 - 49845525
Alignment:
Q  237 ctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctt 304  Q
    |||||||||| |||||||||||| |||| ||| |  ||||| ||||| |||||| |||||||||||||    
T  49845458 ctgtttggattgacttatttgagcttatatactagtataaaaacttatgaaactatttgggagagctt 49845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 30321937 - 30321999
Alignment:
Q  238 tgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggaga 300  Q
    |||||||||  |||| |||||| ||||||||  |||||||||| || ||||||||||||||||    
T  30321937 tgtttggatgaacttctttgagcttatttactgacataaacacctatgaaactgtttgggaga 30321999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 44284085 - 44284143
Alignment:
Q  311 tatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||||| ||||| ||||||| ||||||| |||| ||||| || ||||||||||||||||    
T  44284085 tatccataagctattttcagcttatttctataagctctccaggatagcttatgaaaaca 44284143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 48528609 - 48528563
Alignment:
Q  323 gttttcagtttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||||||| ||||||| |||||||||| || ||||||||||||||||    
T  48528609 gttttcagcttatttctataaactctccagaatagcttatgaaaaca 48528563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 453
Target Start/End: Original strand, 16790462 - 16790507
Alignment:
Q  408 ttgttacaaaaatagcttatatataagcactaatatgataagtgct 453  Q
    |||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  16790462 ttgttataaaaatagcttatacataagcacttatatgataaatgct 16790507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 37138345 - 37138292
Alignment:
Q  321 ctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactta 374  Q
    |||||||||| |||||| | |||||||||||  |||||||||||||| ||||||    
T  37138345 ctgttttcagcttattttcctaaactctctaagatagcttatgaaaataactta 37138292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 39311705 - 39311742
Alignment:
Q  332 ttatttccataaactctctagcatagcttatgaaaaca 369  Q
    |||||||||||||||||| || ||||||||||||||||    
T  39311705 ttatttccataaactctccagtatagcttatgaaaaca 39311742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 41671293 - 41671252
Alignment:
Q  415 aaaaatagcttatatataagcactaatatgataagtgcttat 456  Q
    ||||||||| ||||||||| |||| |||||||||||||||||    
T  41671293 aaaaatagcgtatatataatcacttatatgataagtgcttat 41671252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 41848630 - 41848679
Alignment:
Q  233 gggtctgtttggatcgacttatttgagtttatttacgaacataaacactt 282  Q
    |||||| ||| ||| ||||||||||||||||| ||| |||||||||||||    
T  41848630 gggtctatttagattgacttatttgagtttatctactaacataaacactt 41848679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 48048984 - 48049049
Alignment:
Q  308 acatatccacaagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactt 373  Q
    |||| |||| ||||||||||||| |||||||||||| ||| | |  |||||| |||||||||||||    
T  48048984 acatgtccataagctgttttcagcttatttccataacctccccaagatagctaatgaaaacaactt 48049049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 306384 - 306329
Alignment:
Q  318 aagctgttttcagtttatttccataaactctctagcatagcttatgaaaacaactt 373  Q
    ||||||||||||| ||| || ||||| |||||||| ||||||||||||||||||||    
T  306384 aagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 4252 - 4321
Alignment:
Q  335 tttccataaactctctagcatagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    ||||| ||| || ||||||||||||||| |||||| |||| | |||||||||||||| |||||||||||||    
T  4252 tttccgtaagctttctagcatagcttattaaaacagcttata-gtttatatgaaaacggtttgactttatt 4321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 6735 - 6792
Alignment:
Q  400 tttattgtttgttacaaaaatagcttatatataagcactaatatgataagtgcttata 457  Q
    |||||| ||||||| | |||||| ||||| ||||||||| ||||||||||||||||||    
T  6735 tttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttata 6792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 116654 - 116711
Alignment:
Q  400 tttattgtttgttacaaaaatagcttatatataagcactaatatgataagtgcttata 457  Q
    |||||| ||||||| | |||||| ||||| ||||||||| ||||||||||||||||||    
T  116654 tttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttata 116711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 27598 - 27548
Alignment:
Q  354 atagcttatgaaaacaacttaaaagtttatatgaaaacagtttgactttatt 405  Q
    |||| |||||||||||||||| | ||||||||||||||| ||||||||||||    
T  27598 atagtttatgaaaacaacttata-gtttatatgaaaacaatttgactttatt 27548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 29659 - 29704
Alignment:
Q  219 attttatgaactaagggtctgtttggatcgacttatttgagtttat 264  Q
    |||||| ||| | |||||||||| ||||||||||||||||||||||    
T  29659 attttaagaaattagggtctgttaggatcgacttatttgagtttat 29704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University