View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15998_low_2 (Length: 874)

Name: NF15998_low_2
Description: NF15998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15998_low_2
NF15998_low_2
[»] chr4 (30 HSPs)
chr4 (1-874)||(18019459-18020332)
chr4 (435-572)||(30207583-30207723)
chr4 (485-577)||(54325044-54325135)
chr4 (414-472)||(54414845-54414903)
chr4 (485-545)||(7368094-7368154)
chr4 (485-568)||(24929465-24929547)
chr4 (485-577)||(49219111-49219202)
chr4 (587-658)||(7367967-7368038)
chr4 (489-568)||(7694026-7694104)
chr4 (401-563)||(8422860-8423024)
chr4 (442-572)||(21157692-21157826)
chr4 (530-601)||(32799723-32799794)
chr4 (516-582)||(11264303-11264369)
chr4 (490-572)||(26747414-26747496)
chr4 (500-577)||(8468935-8469011)
chr4 (516-569)||(11158372-11158425)
chr4 (533-582)||(29467626-29467675)
chr4 (516-572)||(6466058-6466114)
chr4 (516-572)||(6978974-6979030)
chr4 (588-640)||(22236036-22236088)
chr4 (516-572)||(24370965-24371021)
chr4 (396-483)||(40709485-40709572)
chr4 (485-588)||(42321876-42321977)
chr4 (405-483)||(8703727-8703805)
chr4 (397-510)||(22684589-22684707)
chr4 (492-554)||(42866047-42866108)
chr4 (514-572)||(55084493-55084551)
chr4 (485-535)||(55870390-55870439)
chr4 (608-657)||(28615441-28615490)
chr4 (589-658)||(37636099-37636168)
[»] chr2 (35 HSPs)
chr2 (1-874)||(3058984-3059857)
chr2 (515-575)||(4085209-4085269)
chr2 (456-572)||(39983281-39983400)
chr2 (436-536)||(17952749-17952853)
chr2 (521-582)||(32821816-32821877)
chr2 (487-568)||(43141845-43141925)
chr2 (447-572)||(3235396-3235523)
chr2 (485-572)||(11513870-11513956)
chr2 (485-572)||(33942122-33942208)
chr2 (415-510)||(43808473-43808573)
chr2 (485-582)||(7103484-7103581)
chr2 (521-582)||(1939334-1939395)
chr2 (485-582)||(17221542-17221638)
chr2 (516-572)||(13736305-13736361)
chr2 (488-572)||(22681197-22681280)
chr2 (485-536)||(5043608-5043658)
chr2 (517-572)||(16785360-16785415)
chr2 (608-658)||(1830146-1830196)
chr2 (516-582)||(10563560-10563626)
chr2 (486-568)||(13630297-13630378)
chr2 (586-660)||(15120268-15120342)
chr2 (391-507)||(32098384-32098508)
chr2 (435-536)||(37053511-37053616)
chr2 (591-653)||(37276834-37276896)
chr2 (485-551)||(37292380-37292445)
chr2 (401-483)||(42974235-42974317)
chr2 (485-535)||(43299451-43299501)
chr2 (528-569)||(3973549-3973590)
chr2 (489-582)||(10285836-10285928)
chr2 (441-482)||(13234432-13234473)
chr2 (590-667)||(21279953-21280030)
chr2 (521-558)||(29419868-29419905)
chr2 (442-510)||(33267589-33267662)
chr2 (608-653)||(41170717-41170762)
chr2 (589-650)||(43985297-43985358)
[»] chr8 (41 HSPs)
chr8 (452-567)||(29973015-29973134)
chr8 (550-657)||(1664418-1664525)
chr8 (441-577)||(28769346-28769486)
chr8 (520-572)||(2458578-2458630)
chr8 (478-582)||(11795057-11795160)
chr8 (516-568)||(30277261-30277313)
chr8 (485-572)||(27728033-27728119)
chr8 (586-655)||(10062057-10062126)
chr8 (485-574)||(38561698-38561786)
chr8 (401-473)||(12972739-12972811)
chr8 (516-583)||(29973153-29973221)
chr8 (516-572)||(31705087-31705143)
chr8 (485-553)||(34770864-34770931)
chr8 (550-657)||(1892138-1892245)
chr8 (521-584)||(7107722-7107785)
chr8 (486-572)||(31862466-31862551)
chr8 (516-577)||(8062331-8062392)
chr8 (523-568)||(11188171-11188216)
chr8 (521-590)||(11415161-11415230)
chr8 (521-566)||(39268522-39268567)
chr8 (516-568)||(4558800-4558852)
chr8 (510-566)||(8060665-8060721)
chr8 (488-572)||(8062499-8062582)
chr8 (488-532)||(43704430-43704473)
chr8 (586-657)||(1889049-1889120)
chr8 (443-506)||(5290566-5290629)
chr8 (487-574)||(10075561-10075647)
chr8 (523-582)||(14949875-14949934)
chr8 (414-473)||(31875674-31875733)
chr8 (483-577)||(34570423-34570517)
chr8 (417-483)||(11476992-11477058)
chr8 (516-558)||(26473778-26473820)
chr8 (488-584)||(5088823-5088922)
chr8 (485-566)||(6864477-6864557)
chr8 (485-582)||(9699973-9700069)
chr8 (489-582)||(12361168-12361260)
chr8 (485-554)||(13561342-13561410)
chr8 (516-652)||(14926901-14927037)
chr8 (398-475)||(32157306-32157383)
chr8 (442-483)||(41620396-41620437)
chr8 (513-558)||(42197151-42197196)
[»] chr7 (23 HSPs)
chr7 (387-534)||(9527140-9527291)
chr7 (478-568)||(37064236-37064328)
chr7 (485-572)||(39505929-39506014)
chr7 (450-567)||(24909601-24909717)
chr7 (516-582)||(24363603-24363669)
chr7 (485-553)||(28340427-28340494)
chr7 (485-534)||(17989073-17989121)
chr7 (450-567)||(24895294-24895409)
chr7 (485-578)||(29363490-29363582)
chr7 (521-582)||(44615106-44615167)
chr7 (485-557)||(10190767-10190838)
chr7 (488-572)||(38010689-38010772)
chr7 (521-660)||(529382-529521)
chr7 (528-583)||(1710744-1710799)
chr7 (590-653)||(30535652-30535715)
chr7 (516-566)||(2825249-2825299)
chr7 (586-640)||(10079270-10079324)
chr7 (485-563)||(23721478-23721555)
chr7 (516-577)||(4966158-4966219)
chr7 (523-572)||(26935569-26935618)
chr7 (457-510)||(39345422-39345475)
chr7 (485-582)||(44151482-44151578)
chr7 (442-483)||(45078217-45078258)
[»] scaffold0199 (1 HSPs)
scaffold0199 (550-657)||(6859-6966)
[»] chr5 (35 HSPs)
chr5 (489-568)||(16889711-16889789)
chr5 (485-582)||(28586768-28586864)
chr5 (499-590)||(40205068-40205156)
chr5 (608-655)||(34198528-34198575)
chr5 (414-483)||(33961599-33961668)
chr5 (499-572)||(37588372-37588444)
chr5 (401-505)||(26516181-26516285)
chr5 (441-513)||(29281088-29281159)
chr5 (441-572)||(11684346-11684472)
chr5 (485-572)||(14295478-14295564)
chr5 (416-580)||(29588778-29588945)
chr5 (452-566)||(31030148-31030264)
chr5 (513-572)||(36318773-36318832)
chr5 (516-582)||(15074751-15074817)
chr5 (499-572)||(37526211-37526283)
chr5 (485-569)||(8985633-8985716)
chr5 (435-566)||(36539663-36539798)
chr5 (520-572)||(37611227-37611279)
chr5 (520-572)||(37787957-37788009)
chr5 (489-568)||(10272447-10272525)
chr5 (623-662)||(12074355-12074394)
chr5 (485-568)||(15003530-15003612)
chr5 (516-567)||(17368678-17368729)
chr5 (401-511)||(20982207-20982322)
chr5 (521-572)||(36638754-36638805)
chr5 (485-536)||(41277398-41277448)
chr5 (441-483)||(1961915-1961957)
chr5 (415-473)||(6738522-6738580)
chr5 (586-640)||(40534284-40534338)
chr5 (589-642)||(1084068-1084121)
chr5 (489-582)||(2468406-2468499)
chr5 (434-483)||(10391269-10391318)
chr5 (486-568)||(19138733-19138816)
chr5 (495-572)||(19369295-19369371)
chr5 (523-572)||(30653388-30653437)
[»] chr1 (27 HSPs)
chr1 (485-572)||(30257655-30257741)
chr1 (485-583)||(4215344-4215441)
chr1 (485-575)||(7218083-7218172)
chr1 (586-650)||(5157157-5157221)
chr1 (516-568)||(25479583-25479635)
chr1 (449-582)||(6279335-6279467)
chr1 (487-568)||(15361687-15361767)
chr1 (417-572)||(4200128-4200287)
chr1 (493-577)||(12564881-12564964)
chr1 (516-572)||(51929787-51929843)
chr1 (493-568)||(3924604-3924678)
chr1 (485-536)||(19462814-19462864)
chr1 (485-536)||(25006082-25006132)
chr1 (589-652)||(28467521-28467584)
chr1 (494-533)||(40751181-40751220)
chr1 (485-568)||(45205040-45205122)
chr1 (516-558)||(5924057-5924099)
chr1 (486-536)||(8130409-8130458)
chr1 (486-568)||(33723398-33723479)
chr1 (401-483)||(49560664-49560746)
chr1 (517-555)||(50319273-50319311)
chr1 (486-535)||(5756735-5756783)
chr1 (485-558)||(17269222-17269294)
chr1 (485-558)||(27738206-27738278)
chr1 (485-566)||(28467326-28467405)
chr1 (418-483)||(46504322-46504387)
chr1 (516-577)||(47598428-47598489)
[»] chr6 (16 HSPs)
chr6 (414-483)||(31461574-31461643)
chr6 (488-572)||(2117378-2117461)
chr6 (418-479)||(3217299-3217360)
chr6 (485-568)||(281864-281946)
chr6 (485-566)||(4006686-4006766)
chr6 (518-602)||(5564110-5564194)
chr6 (485-572)||(20671878-20671963)
chr6 (525-568)||(34939755-34939798)
chr6 (485-572)||(4420617-4420701)
chr6 (519-568)||(7931805-7931854)
chr6 (442-572)||(8010281-8010415)
chr6 (485-582)||(8420199-8420295)
chr6 (521-582)||(19275638-19275699)
chr6 (586-639)||(27857443-27857496)
chr6 (434-483)||(31668790-31668839)
chr6 (414-483)||(33068666-33068735)
[»] chr3 (29 HSPs)
chr3 (498-582)||(22214661-22214744)
chr3 (485-577)||(36646389-36646480)
chr3 (521-652)||(13709755-13709886)
chr3 (520-601)||(31403153-31403234)
chr3 (485-569)||(24887298-24887381)
chr3 (499-570)||(14548735-14548805)
chr3 (521-572)||(30923910-30923961)
chr3 (485-572)||(41452495-41452581)
chr3 (516-577)||(237399-237460)
chr3 (485-570)||(1816555-1816639)
chr3 (417-662)||(12923250-12923496)
chr3 (516-572)||(30322032-30322088)
chr3 (485-568)||(40122769-40122850)
chr3 (433-472)||(659934-659973)
chr3 (516-575)||(21367669-21367728)
chr3 (485-564)||(23315598-23315676)
chr3 (485-536)||(28306130-28306180)
chr3 (427-474)||(28842971-28843018)
chr3 (439-490)||(49772766-49772817)
chr3 (586-653)||(49845458-49845525)
chr3 (590-652)||(30321937-30321999)
chr3 (521-579)||(44284085-44284143)
chr3 (521-567)||(48528563-48528609)
chr3 (437-482)||(16790462-16790507)
chr3 (516-569)||(37138292-37138345)
chr3 (521-558)||(39311705-39311742)
chr3 (434-475)||(41671252-41671293)
chr3 (608-657)||(41848630-41848679)
chr3 (517-582)||(48048984-48049049)
[»] scaffold0003 (1 HSPs)
scaffold0003 (517-572)||(306329-306384)
[»] scaffold0110 (1 HSPs)
scaffold0110 (485-555)||(4252-4321)
[»] scaffold0654 (1 HSPs)
scaffold0654 (433-490)||(6735-6792)
[»] scaffold0014 (1 HSPs)
scaffold0014 (433-490)||(116654-116711)
[»] scaffold0024 (1 HSPs)
scaffold0024 (485-536)||(27548-27598)
[»] scaffold0200 (1 HSPs)
scaffold0200 (626-671)||(29659-29704)


Alignment Details
Target: chr4 (Bit Score: 798; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 1 - 874
Target Start/End: Original strand, 18019459 - 18020332
Alignment:
Q  1 ttctattggaagaatccaaaagaacaaaaagctattattattatcattctcatggctcctatttatgctattgtttcctttgttggtctcttggatatta 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18019459 ttctattggaagaatccaaaagaacaaaaagctattatcattatcattctcatggctcctatttatgctattgtttcctttgttggtctcttggatatta 18019558  T
Q  101 gaggaagcaaagagtttttcactcttttggagtctattaaagaatgttatgaagcttttgttattgcaaagtttttgtctttgatgtatagttacttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18019559 gaggaagcaaagagtttttcactcttttggagtctattaaagaatgttatgaagcttttgttattgcaaagtttttgtctttgatgtatagttacttgaa 18019658  T
Q  201 aatttccattactaaaaatattgtgcctgatgaaattaaaggaagggaaattcatcactcttttcctatgacactttttcaggtatgctttgcnnnnnnn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  18019659 aatttccattactaaaaatattgtgcctgatgaaattaaaggaagggaaattcatcactcttttcctatgacactttttcaggtatgctttgcttttttt 18019758  T
Q  301 gtactgacaattttggggggaatgaatcttcgtggaattttttcgtatctttgatgttcagtttgtacaaacaagtgaataatcaacaatttagactcta 400  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18019759 gtactgataattttggggggaatgaatcttcgtggaattttt-cgtatctttgatgttcagtttgtacaaacaagtgaataatcaacaatttagactcta 18019857  T
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttata-tataagctatttttgtaacaaacaataaagtcaaactg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  18019858 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatactataagctatttttgtaacaaacgataaagtcaaactg 18019957  T
Q  500 ttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaac 599  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18019958 ttttcatataaacttgtgagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttataagctctcccaaac 18020057  T
Q  600 agtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgggtcggacaatttgttctcttaatta 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  18020058 agtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgtgtcggacaatttggcctcttaatta 18020157  T
Q  700 ttgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgaagttgtcctggatgaactaatgttaat 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18020158 ttgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgatgttgtcctggatgaactaatgttaat 18020257  T
Q  800 gagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcct 874  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020258 gagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcct 18020332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 435 - 572
Target Start/End: Complemental strand, 30207723 - 30207583
Alignment:
Q  435 taagcacttatcatattagtgcttatatataagctatttttgtaacaaacaataaagt----caaactgttttcatataaacttttaagttgttttcata 530  Q
    |||||||||||||||| ||||||||| |||| | || || | ||||||| |||||| |    |||||||||||||||||| || | ||||||||||||||    
T  30207723 taagcacttatcatataagtgcttatgtatatgttagttctataacaaaaaataaaataaatcaaactgttttcatataagctat-aagttgttttcata 30207625  T
Q  531 agctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||   ||||||| |||||||||||| |||||||||||||    
T  30207624 agctaccttagagagattatggaaataagctgaaaacagctt 30207583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 485 - 577
Target Start/End: Complemental strand, 54325135 - 54325044
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    |||||||||||||||||||||||||| || | ||| | |||||| |||||||  | ||||||||||||| |||||||||||||||||| ||||    
T  54325135 aataaagtcaaactgttttcatataagctat-aagctattttcaaaagctatcatggagagtttatggagataaactgaaaacagcttatgga 54325044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 54414845 - 54414903
Alignment:
Q  414 cttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatt 472  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||    
T  54414845 cttaattaagtgtttatgttataagcgcttatcatataagtgcttatgtataagctatt 54414903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 485 - 545
Target Start/End: Complemental strand, 7368154 - 7368094
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagag 545  Q
    |||||||||||| ||||||||||||| ||| |||||||||| |||||||||| ||||||||    
T  7368154 aataaagtcaaattgttttcatataagcttataagttgtttccataagctattctagagag 7368094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 568
Target Start/End: Original strand, 24929465 - 24929547
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    ||||||||| ||||||||||||| || || | ||||||||||||||| || | |||||||| |||||||||||| |||||||||    
T  24929465 aataaagtctaactgttttcataaaagctat-aagttgttttcataaactctactagagagcttatggaaataagctgaaaaca 24929547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 577
Target Start/End: Original strand, 49219111 - 49219202
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    |||||||||||| | ||||||||||| || | ||||||||||||||| ||||  || |||| |||||||||||| ||||||||| ||| ||||    
T  49219111 aataaagtcaaattattttcatataagctat-aagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaacttatgga 49219202  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 587 - 658
Target Start/End: Complemental strand, 7368038 - 7367967
Alignment:
Q  587 agctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccct 658  Q
    |||||||||||||||| ||  ||| |||||||   ||| ||||||||||||||||| |||||||||||||||    
T  7368038 agctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaacagaccct 7367967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 489 - 568
Target Start/End: Complemental strand, 7694104 - 7694026
Alignment:
Q  489 aagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||||||||  ||||| || | ||| |||||||||||| ||| || |||||||||||||||||| |||||||||    
T  7694104 aagtcaaactgtttttgtataagctat-aagctgttttcataagttatcctggagagtttatggaaataagctgaaaaca 7694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 563
Target Start/End: Complemental strand, 8423024 - 8422860
Alignment:
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaacaataaagtcaa---ac 497  Q
    |||||| || || ||||||||||||||||||  |||| ||  ||||||||  |||||||| |||||||||||||| ||| |||  ||||| | ||   |     
T  8423024 tttggataaacaacttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagtcat 8422925  T
Q  498 tgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactga 563  Q
    ||||||||||||| | | ||||||||||||| || ||||  | ||||||||||| |||||| ||||    
T  8422924 tgttttcatataagc-tataagttgttttcacaatctatcttggagagtttatgcaaataagctga 8422860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 442 - 572
Target Start/End: Original strand, 21157692 - 21157826
Alignment:
Q  442 ttatcatattagtgcttatatataagctatttttgtaacaaacaataaa-----gtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    ||||||||| ||||||||| ||| |||||||||  |||||||  |||||     |||||||||||||||| ||| || | ||| |||||||||| |||||    
T  21157692 ttatcatataagtgcttatgtatcagctattttgataacaaagtataaactaaagtcaaactgttttcatgtaagctat-aagatgttttcatatgctat 21157790  T
Q  537 gctagagagtttatggaaataaactgaaaacagctt 572  Q
     ||  |||| |||||||||||| || ||||||||||    
T  21157791 cctgaagagcttatggaaataagctaaaaacagctt 21157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 530 - 601
Target Start/End: Complemental strand, 32799794 - 32799723
Alignment:
Q  530 aagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacag 601  Q
    |||||||  |||||||||||| ||||||| ||||||||||||| ||||| ||| | |||||||| |||||||    
T  32799794 aagctatcatagagagtttatcgaaataagctgaaaacagcttatggatgtgtcataagctctctcaaacag 32799723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 582
Target Start/End: Original strand, 11264303 - 11264369
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||||||||||| || |||||||| ||||||||||||  ||||||||| || |||| ||||    
T  11264303 taagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgt 11264369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 26747496 - 26747414
Alignment:
Q  490 agtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||| ||||||||||| ||| |||||||||||||| || ||| ||| |||  |||||||||||| || |||| |||||    
T  26747496 agtcaaactattttcatataagcttataagttgttttcattagttatcctaaagaacttatggaaataagctaaaaaaagctt 26747414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 577
Target Start/End: Original strand, 8468935 - 8469011
Alignment:
Q  500 ttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    ||||||||||| || ||| |||||||||||||| ||| |||||||| ||||| |||||| ||||||||| ||| ||||    
T  8468935 ttttcatataagctatta-gttgttttcataagttattctagagagcttatgaaaataatctgaaaacaacttatgga 8469011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 569
Target Start/End: Complemental strand, 11158425 - 11158372
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacag 569  Q
    |||||||||||||||||||||  ||||||| || ||||||||| ||||||||||    
T  11158425 taagttgttttcataagctatcttagagagcttgtggaaataagctgaaaacag 11158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 582
Target Start/End: Complemental strand, 29467675 - 29467626
Alignment:
Q  533 ctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||| ||||    
T  29467675 ctatcctagagagtttatggaaataagctgaaaacagcttatggacatgt 29467626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 6466114 - 6466058
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||| |||||||||| |||||||| ||||||||||||  |||||| |||||    
T  6466114 taagttgtttccataagctattctagagagattatggaaataagttgaaaatagctt 6466058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 6979030 - 6978974
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||| |||||| || ||| |||||||||| |||||| |||||||||||||    
T  6979030 taagttgtttttataagccatcctaaagagtttatgaaaataagctgaaaacagctt 6978974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 588 - 640
Target Start/End: Complemental strand, 22236088 - 22236036
Alignment:
Q  588 gctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataag 640  Q
    ||||||||||||||||||  ||||| ||||||| |||||| ||||||||||||    
T  22236088 gctctcccaaacagtttcgcaagtggttatgttagtaaatgaactcaaataag 22236036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 24371021 - 24370965
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||||||||||||| ||| | ||||||| ||||||| |||||||| ||||    
T  24371021 taagttgttttcataagctatcctaaatagtttatagaaataagctgaaaacggctt 24370965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 40709572 - 40709485
Alignment:
Q  396 ctctatttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    |||||| |||| || || |||||||||||| |||||| |||| ||||||  |||| ||||||||| |||||||| ||| | |||||||    
T  40709572 ctctatatggataaacaacttaattaagtgcttatatcataaccacttaatatataagtgcttatttataagctgtttctataacaaa 40709485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 588
Target Start/End: Complemental strand, 42321977 - 42321876
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtta 584  Q
    |||||||||||| |||||||||||||| || |||||||||||| |||| |||  |  ||||||||  ||| ||||||||||||| ||| || | ||||||    
T  42321977 aataaagtcaaattgttttcatataaa-ttataagttgttttc-taagttataatgaagagtttaaagaactaaactgaaaacaacttatgaacatgtta 42321880  T
Q  585 caag 588  Q
    ||||    
T  42321879 caag 42321876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 8703805 - 8703727
Alignment:
Q  405 gacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    ||||| || |||||||||||| |||||  ||||  |||||||| || ||||||||| |||||||||||| | |||||||    
T  8703805 gacaaacagcttaattaagtgcttataacataaatacttatcagatgagtgcttatgtataagctatttctctaacaaa 8703727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 397 - 510
Target Start/End: Complemental strand, 22684707 - 22684589
Alignment:
Q  397 tctatttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaac-----aataaag 491  Q
    |||| ||||| || || ||||||||| || |||||  ||| || |||||||||| | ||||| | |||||||||||| | ||||||||     |||||||    
T  22684707 tctagttggataaacaacttaattaattgcttataccatatgcgcttatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaag 22684608  T
Q  492 tcaaactgttttcatataa 510  Q
    ||||| |||||||||||||    
T  22684607 tcaaattgttttcatataa 22684589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 42866047 - 42866108
Alignment:
Q  492 tcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaa 554  Q
    |||||||||||| |||||| || | |||||||||||||||||||| || ||||| ||||||||    
T  42866047 tcaaactgtttttatataagctat-aagttgttttcataagctatccttgagagcttatggaa 42866108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 514 - 572
Target Start/End: Complemental strand, 55084551 - 55084493
Alignment:
Q  514 tttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||| ||||||  ||||||| ||||| |||||| |||||| ||||||    
T  55084551 tttaagttgttttcatgagctatcttagagagcttatgaaaataagctgaaaccagctt 55084493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 55870439 - 55870390
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagcta 535  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||||||    
T  55870439 aataaagtcaaactgttttcacataagc-tataagttgttttcataagcta 55870390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 657
Target Start/End: Original strand, 28615441 - 28615490
Alignment:
Q  608 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccc 657  Q
    ||||||||||| | ||| ||||||| ||||||||| ||||||||||||||    
T  28615441 aagtgtttatgctagtagataaacttaaataagtcaatccaaacagaccc 28615490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 658
Target Start/End: Complemental strand, 37636168 - 37636099
Alignment:
Q  589 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccct 658  Q
    ||||||||||||||||   | ||| ||||||| ||| |||||||||||||| || ||||||| |||||||    
T  37636168 ctctcccaaacagttttacaggtgcttatgttagtagataaactcaaataaatcaatccaaatagaccct 37636099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 798; Significance: 0; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 1 - 874
Target Start/End: Complemental strand, 3059857 - 3058984
Alignment:
Q  1 ttctattggaagaatccaaaagaacaaaaagctattattattatcattctcatggctcctatttatgctattgtttcctttgttggtctcttggatatta 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059857 ttctattggaagaatccaaaagaacaaaaagctattatcattatcattctcatggctcctatttatgctattgtttcctttgttggtctcttggatatta 3059758  T
Q  101 gaggaagcaaagagtttttcactcttttggagtctattaaagaatgttatgaagcttttgttattgcaaagtttttgtctttgatgtatagttacttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059757 gaggaagcaaagagtttttcactcttttggagtctattaaagaatgttatgaagcttttgttattgcaaagtttttgtctttgatgtatagttacttgaa 3059658  T
Q  201 aatttccattactaaaaatattgtgcctgatgaaattaaaggaagggaaattcatcactcttttcctatgacactttttcaggtatgctttgcnnnnnnn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  3059657 aatttccattactaaaaatattgtgcctgatgaaattaaaggaagggaaattcatcactcttttcctatgacactttttcaggtatgctttgcttttttt 3059558  T
Q  301 gtactgacaattttggggggaatgaatcttcgtggaattttttcgtatctttgatgttcagtttgtacaaacaagtgaataatcaacaatttagactcta 400  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059557 gtactgataattttggggggaatgaatcttcgtggaattttt-cgtatctttgatgttcagtttgtacaaacaagtgaataatcaacaatttagactcta 3059459  T
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttata-tataagctatttttgtaacaaacaataaagtcaaactg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  3059458 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatactataagctatttttgtaacaaacgataaagtcaaactg 3059359  T
Q  500 ttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaac 599  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3059358 ttttcatataaacttgtgagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttataagctctcccaaac 3059259  T
Q  600 agtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgggtcggacaatttgttctcttaatta 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  3059258 agtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgtgtcggacaatttggcctcttaatta 3059159  T
Q  700 ttgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgaagttgtcctggatgaactaatgttaat 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3059158 ttgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgatgttgtcctggatgaactaatgttaat 3059059  T
Q  800 gagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcct 874  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059058 gagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcct 3058984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 4085269 - 4085209
Alignment:
Q  515 ttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtg 575  Q
    |||||||||||||||||||||| | | ||||||||||||||||||| |||| |||||||||    
T  4085269 ttaagttgttttcataagctatcccacagagtttatggaaataaacagaaagcagcttgtg 4085209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 572
Target Start/End: Original strand, 39983281 - 39983400
Alignment:
Q  456 cttatatataagctatttttgtaacaaac----aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatg 551  Q
    ||||||||||||||||||||||||||||     |||||| | |||   ||||||||||| || | |||||||||||||||||||| || ||||| | |||    
T  39983281 cttatatataagctatttttgtaacaaaggtaaaataaaataaaataattttcatataagctat-aagttgttttcataagctatcctggagagctaatg 39983379  T
Q  552 gaaataaactgaaaacagctt 572  Q
     |||||||||||||| |||||    
T  39983380 aaaataaactgaaaatagctt 39983400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 436 - 536
Target Start/End: Complemental strand, 17952853 - 17952749
Alignment:
Q  436 aagcacttatcatattagtgcttatatataagctatttttgtaacaa-----acaataaagtcaaactgttttcatataaacttttaagttgttttcata 530  Q
    ||||||||||||||| || ||||||||||||||||||| | ||||||     | |||||||||||||| ||||||||||| | |  ||| ||||||||||    
T  17952853 aagcacttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagc-tacaagatgttttcata 17952755  T
Q  531 agctat 536  Q
    ||||||    
T  17952754 agctat 17952749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 521 - 582
Target Start/End: Original strand, 32821816 - 32821877
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||||||||||| |||| ||||    
T  32821816 tgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgt 32821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 487 - 568
Target Start/End: Original strand, 43141845 - 43141925
Alignment:
Q  487 taaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||| ||||| ||||||| || | ||| |||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  43141845 taaagtcaaattgtttccatataagctat-aagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaaca 43141925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 572
Target Start/End: Complemental strand, 3235523 - 3235396
Alignment:
Q  447 atattagtgcttatatataagctatttttgtaacaaac----aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctaga 542  Q
    |||| ||||||||| ||| |||||||||| |||||||     |||||||||||||||||| |||||||||| | ||| ||||||||||  ||||  |  |    
T  3235523 atataagtgcttatgtattagctatttttataacaaatgaaaaataaagtcaaactgttt-catataaactat-aagctgttttcatatactatcttgaa 3235426  T
Q  543 gagtttatggaaataaactgaaaacagctt 572  Q
     ||||||||||||||| |||||||||||||    
T  3235425 aagtttatggaaataagctgaaaacagctt 3235396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 11513870 - 11513956
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||| ||||||||||||| || | ||||||||||||||||||||  | ||||  || ||||||||| ||||||| |||||    
T  11513870 aataaagtcaaattgttttcatataagctat-aagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagctt 11513956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 33942122 - 33942208
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||||||||| ||| || | ||||||||||||||||| ||  ||||||| | ||| |||| | |||||||||||||    
T  33942122 aataaagtcaaactgttttcatgtaagctat-aagttgttttcataagccatcatagagagctaatgaaaattagctgaaaacagctt 33942208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 415 - 510
Target Start/End: Original strand, 43808473 - 43808573
Alignment:
Q  415 ttaattaagtgtttatattataagcacttatcatattagtgcttatatataagcta-tttttgtaacaaac----aataaagtcaaactgttttcatata 509  Q
    |||||||||||||||||  |||||| | |||||||| |||| |||| ||||||||| ||||| ||||||||    |||||||| ||||| ||||||||||    
T  43808473 ttaattaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatata 43808572  T
Q  510 a 510  Q
    |    
T  43808573 a 43808573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 582
Target Start/End: Complemental strand, 7103581 - 7103484
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgtttt-cataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||||||||| |||||| || | ||| |||||| ||||||||||  |||||||||| || |||||| || |||||| ||| |||||||||    
T  7103581 aataaagtcaaactgttttaatataagctat-aagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaaacaacttatggatatgt 7103484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 582
Target Start/End: Complemental strand, 1939395 - 1939334
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||||||||| || ||||| ||||||||||||  |||||||||||| |||| ||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgt 1939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 582
Target Start/End: Complemental strand, 17221638 - 17221542
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||||| |||| |||||||| || |||||| ||||||||||||||| | |||||  ||| |||||||| || |||| || || |||||||||    
T  17221638 aataaagtcaaattgttctcatataagctattaagt-gttttcataagctatccgagagatcttacggaaataagctaaaaaaagtttatggatatgt 17221542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 13736361 - 13736305
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||  ||||||||||||    
T  13736361 taagctgttttcataagctatactagagagcttatgaaaataacttgaaaacagctt 13736305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 572
Target Start/End: Complemental strand, 22681280 - 22681197
Alignment:
Q  488 aaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||| |||| ||||||||||||| || | ||| ||||||||||| |||| |||||||  |||||||||||| || ||||||||||    
T  22681280 aaagccaaattgttttcatataagctat-aagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctt 22681197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 5043658 - 5043608
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    |||||||||||||||||||||||||| | |  ||||||||||||||||||||    
T  5043658 aataaagtcaaactgttttcatataagc-tagaagttgttttcataagctat 5043608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 572
Target Start/End: Complemental strand, 16785415 - 16785360
Alignment:
Q  517 aagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||| ||| ||  |||||||||||| |||| |||||||||||||    
T  16785415 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctt 16785360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 658
Target Start/End: Original strand, 1830146 - 1830196
Alignment:
Q  608 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccct 658  Q
    ||||| ||||||  ||||||||||||||||||||| |||||||||| ||||    
T  1830146 aagtgcttatgtcagtaaataaactcaaataagtcaatccaaacaggccct 1830196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 582
Target Start/End: Complemental strand, 10563626 - 10563560
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||||||||||||||  |||| ||| | |||||| ||||||| ||||| |||| ||||    
T  10563626 taagttgttttcataagctatgctgaagagcttaagaaaataagctgaaaatagcttatggacatgt 10563560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 13630378 - 13630297
Alignment:
Q  486 ataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    ||||||||||||||||||||||||| |   |||||||||||| ||| |||| || |||||||||||  |||||  ||||||||    
T  13630378 ataaagtcaaactgttttcatataatc-aataagttgttttcctaatctatccttgagagtttatgacaataagttgaaaaca 13630297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 15120268 - 15120342
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccctta 660  Q
    |||||||||||||||| |||  || |||||||| | ||| ||||  ||||||||||| ||||||||||| |||||    
T  15120268 aagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaacagatcctta 15120342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 391 - 507
Target Start/End: Complemental strand, 32098508 - 32098384
Alignment:
Q  391 ttagactctatttggacaatcatcttaattaagtgtttatattataagcacttatcatatt---agtgcttatatataagctatttttgtaacaa----- 482  Q
    |||||||||||||||| || || |||| ||||||| |||||  |||| || |||||||||    | |||||||||||||||||||| | ||||||         
T  32098508 ttagactctatttggataaacaacttacttaagtgcttatagcataaacagttatcatatactaaatgcttatatataagctatttctataacaaaagat 32098409  T
Q  483 acaataaagtcaaactgttttcata 507  Q
    | |||||||||||| ||||||||||    
T  32098408 aaaataaagtcaaagtgttttcata 32098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 435 - 536
Target Start/End: Original strand, 37053511 - 37053616
Alignment:
Q  435 taagcacttatcatattagtgcttatatataagctatttttgtaac-----aaacaataaagtcaaactgttttcatataaacttttaagttgttttcat 529  Q
    |||||||||||||||| ||||||||| ||||  |||||| | ||||     | | |||||||||||||||||||||||| || || |||||| |||||||    
T  37053511 taagcacttatcatataagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatat-aagttataagtttttttcat 37053609  T
Q  530 aagctat 536  Q
     ||||||    
T  37053610 tagctat 37053616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 591 - 653
Target Start/End: Original strand, 37276834 - 37276896
Alignment:
Q  591 ctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 653  Q
    |||||||||||| ||  ||||| |||| || ||| ||||||| ||||||||||||||||||||    
T  37276834 ctcccaaacagtctcacaagtgcttatattagtagataaacttaaataagtcgatccaaacag 37276896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 551
Target Start/End: Complemental strand, 37292445 - 37292380
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatg 551  Q
    |||||||| ||||| ||||||||||| || ||| ||||||||| |||||||| || |||||||||||    
T  37292445 aataaagtaaaactattttcatataagctatta-gttgttttcttaagctatcctggagagtttatg 37292380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 401 - 483
Target Start/End: Original strand, 42974235 - 42974317
Alignment:
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    |||||| || || |||||||||| | |||||  |||| |||||||||||||||||||| | ||||| |||||| | |||||||    
T  42974235 tttggataagcaacttaattaagagcttatagcataaacacttatcatattagtgcttgtgtataaactatttctataacaaa 42974317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 43299501 - 43299451
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagcta 535  Q
    |||||||||||||||||||  ||||||  | ||||||||||||||||||||    
T  43299501 aataaagtcaaactgtttttgtataaatctataagttgttttcataagcta 43299451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 569
Target Start/End: Original strand, 3973549 - 3973590
Alignment:
Q  528 ataagctatgctagagagtttatggaaataaactgaaaacag 569  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  3973549 ataagctatcctagggagtttatggaaataagctgaaaacag 3973590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 582
Target Start/End: Original strand, 10285836 - 10285928
Alignment:
Q  489 aagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||| |||||||||| || | |||| |||| |||||||||   ||||||  ||||||||||||  |||||||||||| |||| ||||    
T  10285836 aagtcaaactggtttcatataagctat-aagtcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagcttatggacatgt 10285928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 13234432 - 13234473
Alignment:
Q  441 cttatcatattagtgcttatatataagctatttttgtaacaa 482  Q
    |||||||||| ||||||||||| |||||| ||||||||||||    
T  13234432 cttatcatataagtgcttatatgtaagctttttttgtaacaa 13234473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 667
Target Start/End: Complemental strand, 21280030 - 21279953
Alignment:
Q  590 tctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcata 667  Q
    ||||||||||||| || ||||| |||||||  |   ||||||||||||||||| || |||||| ||||||| ||||||    
T  21280030 tctcccaaacagtctcgtaagtatttatgtcagccgataaactcaaataagtcaattcaaacaaacccttaattcata 21279953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 558
Target Start/End: Original strand, 29419868 - 29419905
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataa 558  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  29419868 tgttttcatatgctatcctagagagtttatggaaataa 29419905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 510
Target Start/End: Complemental strand, 33267662 - 33267589
Alignment:
Q  442 ttatcatattagtgcttatatataagctatttttgtaacaaaca-----ataaagtcaaactgttttcatataa 510  Q
    ||||||||| ||||||||| ||||| |||||| | |||||||||     ||||||| |||||||||||||||||    
T  33267662 ttatcatataagtgcttatgtataatctatttctataacaaacagtaaaataaagttaaactgttttcatataa 33267589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 653
Target Start/End: Original strand, 41170717 - 41170762
Alignment:
Q  608 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 653  Q
    ||||||||||||| ||| ||||||||||||||| | ||||||||||    
T  41170717 aagtgtttatgttagtagataaactcaaataagccaatccaaacag 41170762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 650
Target Start/End: Original strand, 43985297 - 43985358
Alignment:
Q  589 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaa 650  Q
    ||||| ||||||||||   ||||||||||||  ||| ||||||| |||||||||||||||||    
T  43985297 ctctctcaaacagttttacaagtgtttatgtcagtagataaacttaaataagtcgatccaaa 43985358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 452 - 567
Target Start/End: Original strand, 29973015 - 29973134
Alignment:
Q  452 agtgcttatatataagctatttttgtaacaaac-----aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagt 546  Q
    |||||||||||||||||||||| | ||||| |      |||||||||||||| |||||| |||| || | |||||||||||||||||||| || ||||||    
T  29973015 agtgcttatatataagctatttctttaacacaaggtaaaataaagtcaaactattttcacataagctat-aagttgttttcataagctatccttgagagt 29973113  T
Q  547 ttatggaaataaactgaaaac 567  Q
    |||||||||||||||||||||    
T  29973114 ttatggaaataaactgaaaac 29973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 550 - 657
Target Start/End: Original strand, 1664418 - 1664525
Alignment:
Q  550 tggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaa 649  Q
    |||||||||||| |||||| ||  |||| |||| | ||||||||||||||||| ||  ||||||||||| | ||| ||||||||||||||||| ||| ||    
T  1664418 tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaa 1664517  T
Q  650 acagaccc 657  Q
    ||||||||    
T  1664518 acagaccc 1664525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 441 - 577
Target Start/End: Complemental strand, 28769486 - 28769346
Alignment:
Q  441 cttatcatattagtgcttatatataagctatttttgtaacaaacaataaa-----gtcaaactgttttcatataaacttttaagttgttttcataagcta 535  Q
    |||||||||| | ||||||| |||||||||||  | |||||||| |||||     |||||||| ||||| ||||| || | ||| |||||||||||||||    
T  28769486 cttatcatataaatgcttatgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagctat-aagctgttttcataagcta 28769388  T
Q  536 tgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    |  | |||||||||||||||||| ||||||||| ||| ||||    
T  28769387 ttttggagagtttatggaaataagctgaaaacaacttatgga 28769346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 2458630 - 2458578
Alignment:
Q  520 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  2458630 ttgtttacataagctatcctagagagcttatggaaataaactgaaaacagctt 2458578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 478 - 582
Target Start/End: Original strand, 11795057 - 11795160
Alignment:
Q  478 aacaaacaataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    |||| |||||||||||| |||||||||||||||  || |||| || |||||||||||||  | ||||| |||||||||||| |||||||||| || ||||    
T  11795057 aacatacaataaagtcacactgttttcatataag-ttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggttatgga 11795155  T
Q  578 tatgt 582  Q
     ||||    
T  11795156 catgt 11795160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 30277313 - 30277261
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  30277313 taagctgttttcataagctatcctagagagtttatggaaataagctgaaaaca 30277261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 27728119 - 27728033
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||| |||||||||||| | ||| |||||||||||||||||| |||||| | | |||||||||| || |||| |||||    
T  27728119 aataaagtcaaactattttcatataaagtatta-gttgttttcataagctatcctagagggatgatggaaataagctaaaaaaagctt 27728033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 586 - 655
Target Start/End: Complemental strand, 10062126 - 10062057
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagac 655  Q
    ||||||||||||| |||||| |||||||| ||||| ||| |||| |||||||||| | ||||||||||||    
T  10062126 aagctctcccaaatagtttcgtaagtgttgatgttagtagataagctcaaataagccaatccaaacagac 10062057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 574
Target Start/End: Original strand, 38561698 - 38561786
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgt 574  Q
    |||||||||||||| |||| || || ||| | ||||||||||||||| ||||  ||||||||| ||| |||||||| |||||||||||||    
T  38561698 aataaagtcaaactatttttatctatactat-aagttgttttcataaactattatagagagttcatgaaaataaacggaaaacagcttgt 38561786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 12972739 - 12972811
Alignment:
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctattt 473  Q
    ||||||||| || |||||||||| | |||||  ||||||| ||||||||| ||||||||| ||||||||||||    
T  12972739 tttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctattt 12972811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 583
Target Start/End: Original strand, 29973153 - 29973221
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaa-cagcttgtggatatgtt 583  Q
    ||||||||||||| ||||||| || |||| ||||||||||||||||||||| |||||| |||| |||||    
T  29973153 taagttgttttcacaagctatccttgagaatttatggaaataaactgaaaaccagcttttggacatgtt 29973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 572
Target Start/End: Original strand, 31705087 - 31705143
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||| |||||||||||||| | || |||||||||||||||||| |||||||||||||    
T  31705087 taagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagctt 31705143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 553
Target Start/End: Original strand, 34770864 - 34770931
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatgga 553  Q
    |||||||||||| ||||||||| ||| || | |||||||||||||||||||| |||||||||| |||||    
T  34770864 aataaagtcaaattgttttcatttaagctat-aagttgttttcataagctatcctagagagttcatgga 34770931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 550 - 657
Target Start/End: Complemental strand, 1892245 - 1892138
Alignment:
Q  550 tggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaa 649  Q
    |||||||||||| |||||| ||  |||| |||| | ||||||| ||||||| | ||  |||||||||||   ||| ||||||||||||||||| ||| ||    
T  1892245 tggaaataaactcaaaacaactaatggacatgtcataagctctgccaaacaatctcacaagtgtttatgacggtagataaactcaaataagtcaatctaa 1892146  T
Q  650 acagaccc 657  Q
    ||||||||    
T  1892145 acagaccc 1892138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 521 - 584
Target Start/End: Complemental strand, 7107785 - 7107722
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtta 584  Q
    |||||||||||||||| |  |||||||||||||||||||| |||||| |||| |||| ||||||    
T  7107785 tgttttcataagctattcaggagagtttatggaaataaacagaaaaccgcttatggacatgtta 7107722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 572
Target Start/End: Original strand, 31862466 - 31862551
Alignment:
Q  486 ataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||||| || || ||||| || | ||| |||||||||||| ||| |||||||| ||||| |||||| |||||||||||||    
T  31862466 ataaagtcaaactattctcgtataagctat-aagatgttttcataagttatcctagagagcttatgaaaataagctgaaaacagctt 31862551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 577
Target Start/End: Original strand, 8062331 - 8062392
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| ||||||||| ||| ||||    
T  8062331 taagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatgga 8062392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 568
Target Start/End: Complemental strand, 11188216 - 11188171
Alignment:
Q  523 ttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  11188216 ttttgataagctatcctagagagtttatggtaataaactgaaaaca 11188171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 590
Target Start/End: Original strand, 11415161 - 11415230
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagct 590  Q
    |||||||||||||||| ||||||||||| || |||||| |||| || ||||| |||| |||||| |||||    
T  11415161 tgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagct 11415230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 566
Target Start/End: Complemental strand, 39268567 - 39268522
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaa 566  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||    
T  39268567 tgttttcataagcttttctagagagcttatggaaataaactgaaaa 39268522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 568
Target Start/End: Original strand, 4558800 - 4558852
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||| ||||| |||||||||| |||||||| ||||||||||||||| ||||||    
T  4558800 taagctgtttccataagctatcctagagagcttatggaaataaactaaaaaca 4558852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 510 - 566
Target Start/End: Original strand, 8060665 - 8060721
Alignment:
Q  510 aacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaa 566  Q
    ||||| |||| ||||||||||||| || |||||||| |||||||||||| |||||||    
T  8060665 aacttataagctgttttcataagcaatcctagagagcttatggaaataagctgaaaa 8060721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 572
Target Start/End: Original strand, 8062499 - 8062582
Alignment:
Q  488 aaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||| ||||||||||||| || | ||| |||| |||||||||||  ||||||||||||| |||||| ||| ||| |||||    
T  8062499 aaagtcaaattgttttcatataagctat-aagatgttctcataagctatcttagagagtttatgaaaataagctggaaatagctt 8062582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 43704473 - 43704430
Alignment:
Q  488 aaagtcaaactgttttcatataaacttttaagttgttttcataag 532  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  43704473 aaagtcaaactgttttcatataaac-tataagttgttttcataag 43704430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 657
Target Start/End: Complemental strand, 1889120 - 1889049
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccc 657  Q
    ||||| ||||||||||| ||  |||||||||||   ||| ||||||||||||||||| ||| ||||||||||    
T  1889120 aagctttcccaaacagtctcaaaagtgtttatgccagtagataaactcaaataagtccatctaaacagaccc 1889049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 5290566 - 5290629
Alignment:
Q  443 tatcatattagtgcttatatataagctatttttgtaacaaacaataaagtcaaactgttttcat 506  Q
    |||||||  ||||||||| |||||||||||| | ||||||| || | |||||||||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaaataaaatagtcaaactgttttcat 5290629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 574
Target Start/End: Complemental strand, 10075647 - 10075561
Alignment:
Q  487 taaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgt 574  Q
    |||||||||||| |||| ||||||  || |||| | |||||||||||||| |||||||| ||||| |||||| || ||| ||||||||    
T  10075647 taaagtcaaactatttttatataag-ttataagctattttcataagctatcctagagagcttatgaaaataagctaaaagcagcttgt 10075561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 582
Target Start/End: Original strand, 14949875 - 14949934
Alignment:
Q  523 ttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||||||| ||| |||| |||| ||||||| ||||||||||||| |||| ||||    
T  14949875 ttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgt 14949934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 31875733 - 31875674
Alignment:
Q  414 cttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctattt 473  Q
    |||||| ||| |||||||  |||||| |||||||||| ||||||||| ||||||||||||    
T  31875733 cttaatgaagcgtttatagcataagcgcttatcatataagtgcttatctataagctattt 31875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 577
Target Start/End: Original strand, 34570423 - 34570517
Alignment:
Q  483 acaataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactg-aaaacagcttgtgga 577  Q
    ||||||||||||||||||||||||||||||    ||||| |||||| || |||| | ||||||  ||||||||||| ||| |||||||||| ||||    
T  34570423 acaataaagtcaaactgttttcatataaac-aacaagttattttcacaaactatccgagagagcatatggaaataagctgtaaaacagcttatgga 34570517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 11477058 - 11476992
Alignment:
Q  417 aattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    ||||||||| |||||  ||||||  ||||||||| |||||| || |||||||||||| |||||||||    
T  11477058 aattaagtgcttatagcataagcttttatcatataagtgctaatgtataagctatttctgtaacaaa 11476992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 26473820 - 26473778
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataa 558  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||    
T  26473820 taagttgttttcataagctatcctagagagcttatgaaaataa 26473778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 584
Target Start/End: Original strand, 5088823 - 5088922
Alignment:
Q  488 aaagtcaaactgttttcatataaacttt---taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtta 584  Q
    ||||||||| | ||||||||||| || |   ||||||||||||| |||| || || ||||| |||| |||||||  |||||||||||| |||| ||||||    
T  5088823 aaagtcaaattattttcatataagctatatataagttgttttcacaagcgatcctggagagcttattgaaataagttgaaaacagcttatggacatgtta 5088922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 566
Target Start/End: Complemental strand, 6864557 - 6864477
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaa 566  Q
    |||||||||||||| ||||||| |||  || |||||||||||||||||||||  | ||||| ||  |||||||| |||||||    
T  6864557 aataaagtcaaactattttcatgtaag-ttataagttgttttcataagctattttggagagcttgaggaaataagctgaaaa 6864477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 582
Target Start/End: Original strand, 9699973 - 9700069
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||| |||||| |||||||| ||||| || |||| |||||||||| | ||| | |||||| ||||| ||||||  |||||||||||| |||| ||||    
T  9699973 aataaggtcaaattgttttcaaataaa-ttataagctgttttcatatgttattcaagagagcttatgaaaataaggtgaaaacagcttatggacatgt 9700069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 582
Target Start/End: Original strand, 12361168 - 12361260
Alignment:
Q  489 aagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||| ||||||||||||| || | ||| |||||||||||| ||| |  ||||| | ||||||||||  |||||||||||| |||| ||||    
T  12361168 aagtcaaattgttttcatataagctat-aagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggacatgt 12361260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 13561410 - 13561342
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaa 554  Q
    |||||||||||| |||||||||||||| || ||| ||||||||| |||||||  | ||||| ||||||||    
T  13561410 aataaagtcaaattgttttcatataaa-ttataacttgttttcacaagctatcattgagagcttatggaa 13561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 652
Target Start/End: Complemental strand, 14927037 - 14926901
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaa-taaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtt 614  Q
    ||||| ||||||| ||||||| ||||||| |||||| ||| | | |||||||||||||   || | || |||||||||| |||||||| ||  ||||| |    
T  14927037 taagtcgttttcagaagctatcctagaga-tttatgcaaaattagctgaaaacagcttacagacacgtcacaagctctctcaaacagtctcacaagtgct 14926939  T
Q  615 tatgttcgtaaataaactcaaataagtcgatccaaaca 652  Q
    ||||   ||||||||  ||||||||||| |||||||||    
T  14926938 tatgccagtaaataagttcaaataagtcaatccaaaca 14926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 32157383 - 32157306
Alignment:
Q  398 ctatttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctattttt 475  Q
    ||||||||| || || |||||||||  | || || ||||||||| |||||||| | || |||||||||||||||||||    
T  32157383 ctatttggataaacaacttaattaaacgcttgtaatataagcacctatcatataattgtttatatataagctattttt 32157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 41620437 - 41620396
Alignment:
Q  442 ttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    ||||||||  |||||||||||||||| |||||||||||||||    
T  41620437 ttatcatacaagtgcttatatataagttatttttgtaacaaa 41620396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 558
Target Start/End: Original strand, 42197151 - 42197196
Alignment:
Q  513 ttttaagttgttttcataagctatgctagagagtttatggaaataa 558  Q
    |||||||||||||||||||| ||| ||  |||||||||||||||||    
T  42197151 ttttaagttgttttcataagttatactcaagagtttatggaaataa 42197196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 387 - 534
Target Start/End: Complemental strand, 9527291 - 9527140
Alignment:
Q  387 caatttagactctatttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaac-- 484  Q
    ||||||||||| | |||||| || || ||  ||||||||  |||| ||||| |||||||||||  |||||||||||||| ||||| | | |||||||       
T  9527291 caatttagactatgtttggataaacagctggattaagtgcctatagtataaacacttatcatacaagtgcttatatatacgctatatctataacaaaaga 9527192  T
Q  485 ---aataaagtcaaactgttttcatataaacttttaagttgttttcataagct 534  Q
       |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  9527191 tataataaagtcaaactgttttcatataaac-tataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 478 - 568
Target Start/End: Complemental strand, 37064328 - 37064236
Alignment:
Q  478 aacaaacaataaagtcaaactgttttcatataaacttttaagttgttttc--ataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||| ||||||||| || |||||||||||||||| |||||||||||||  |||||||||  ||||||| ||||| ||||||||| ||||||    
T  37064328 aacaaaaaataaagtcgaattgttttcatataaactcttaagttgttttcatataagctatcatagagagcttatgaaaataaacttaaaaca 37064236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 39505929 - 39506014
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||| ||||||||||||| ||||||| | || |||||||||||||||||||| || |||||||||||||||||| ||||||| |||||    
T  39505929 aatagagtcaaactgttt-catataagcatt-aagttgttttcataagctattctggagagtttatggaaataagctgaaaatagctt 39506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 24909601 - 24909717
Alignment:
Q  450 ttagtgcttatatataagctatttttgtaacaaacaataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagttta 549  Q
    ||||||||||| |||||||||||| | ||||||| | |||||||||| | ||||||||||| | | ||||||||||||||||| |||  | ||||| ||     
T  24909601 ttagtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagc-tataagttgttttcataagatattgtggagagcttg 24909699  T
Q  550 tggaaataaactgaaaac 567  Q
    ||||||||  ||||||||    
T  24909700 tggaaatatgctgaaaac 24909717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 516 - 582
Target Start/End: Complemental strand, 24363669 - 24363603
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||||||||||| || ||||| |||||||||||| ||||||||| ||| |||| ||||    
T  24363669 taagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgt 24363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 553
Target Start/End: Complemental strand, 28340494 - 28340427
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatgga 553  Q
    |||||||||||||||||||||| |||  || ||||||||||||| |||||||||| ||||| |||||||    
T  28340494 aataaagtcaaactgttttcatgtaag-ttataagttgttttcagaagctatgctggagagcttatgga 28340427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 534
Target Start/End: Complemental strand, 17989121 - 17989073
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagct 534  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  17989121 aataaagtcaaactgttttcatataaac-tataatttgttttcataagct 17989073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 24895294 - 24895409
Alignment:
Q  450 ttagtgcttatatataagctatttttgtaacaaacaataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagttta 549  Q
    |||||| |||| ||||||||||||   ||||||| | |||||||||| | ||||||||||| || | |||||||||||| ||| |||  | ||||| |||    
T  24895294 ttagtgattatctataagctatttcgttaacaaa-agtaaagtcaaattattttcatataagctat-aagttgttttcacaagatattgtggagagctta 24895391  T
Q  550 tggaaataaactgaaaac 567  Q
    |||||||| |||||||||    
T  24895392 tggaaatatactgaaaac 24895409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 578
Target Start/End: Original strand, 29363490 - 29363582
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggat 578  Q
    ||||||||||||||||||||||||  | || |||| |||| ||||||| ||| || ||||| |||||||||||| | |||||||| || |||||    
T  29363490 aataaagtcaaactgttttcatat-tagttataagctgttatcataagttatcctggagagcttatggaaataacccgaaaacagtttttggat 29363582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 582
Target Start/End: Complemental strand, 44615167 - 44615106
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||||| ||  || ||||||||||||||||||  ||||||||||||||||| ||||    
T  44615167 tgttttcataagttagccttgagagtttatggaaataacgtgaaaacagcttgtggacatgt 44615106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 557
Target Start/End: Original strand, 10190767 - 10190838
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaata 557  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||| |||| ||  | || |||||||||||    
T  10190767 aataaagtcaaactgttttcatataaac-tgtaaattgttttcataaactattcttaaaagcttatggaaata 10190838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 572
Target Start/End: Original strand, 38010689 - 38010772
Alignment:
Q  488 aaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||| |||| ||||||||||||| || | ||| ||||||||||| |||| |||||||  |||||||||||| || ||||||||||    
T  38010689 aaagccaaattgttttcatataagctat-aagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctt 38010772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 660
Target Start/End: Original strand, 529382 - 529521
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgtt 620  Q
    ||||||||||||||||  | ||||| ||||| |||||   |||||||||||| || |  ||| | ||| ||||||||| ||  ||  |||||||||||      
T  529382 tgttttcataagctatcttggagagcttatgaaaatatgttgaaaacagcttatgaacttgtcataagttctcccaaatagcctcacaagtgtttatgcc 529481  T
Q  621 cgtaaataaactcaaataagtcgatccaaacagaccctta 660  Q
     ||| |||| |||||||||||| |||||| ||||||||||    
T  529482 agtagataagctcaaataagtcaatccaatcagaccctta 529521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 1710744 - 1710799
Alignment:
Q  528 ataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtt 583  Q
    ||||||||| |||||||| |||||||||||| |||||||||| || |||| |||||    
T  1710744 ataagctattctagagaggttatggaaataagctgaaaacagtttatggagatgtt 1710799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 653
Target Start/End: Original strand, 30535652 - 30535715
Alignment:
Q  590 tctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 653  Q
    ||||| ||||||| ||| ||||||||||||  |||||| |||||||||||||| || |||||||    
T  30535652 tctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaataagtcaattcaaacag 30535715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 566
Target Start/End: Complemental strand, 2825299 - 2825249
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaa 566  Q
    ||||||||||||| ||||||| |||||||  |||||||||||| |||||||    
T  2825299 taagttgttttcacaagctatcctagagaacttatggaaataagctgaaaa 2825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 640
Target Start/End: Complemental strand, 10079324 - 10079270
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataag 640  Q
    |||||||||||||||   || |||||||||||| |||||||||| ||||||||||    
T  10079324 aagctctcccaaacaacctcataagtgtttatgctcgtaaataagctcaaataag 10079270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 563
Target Start/End: Original strand, 23721478 - 23721555
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactga 563  Q
    |||||||||||||| ||||||| ||||| | ||||||||||| ||||||||| || | | | |||||||||||| ||||    
T  23721478 aataaagtcaaactattttcatttaaac-tataagttgtttttataagctatccttgtgcgcttatggaaataagctga 23721555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 577
Target Start/End: Original strand, 4966158 - 4966219
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    |||| ||||||||||||| || ||  |||| |||||||||||||||||||||| ||| ||||    
T  4966158 taagctgttttcataagccatcctgaagagcttatggaaataaactgaaaacaacttatgga 4966219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 26935618 - 26935569
Alignment:
Q  523 ttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||| |||| ||| |||| |||||||||||| |||||||||||||    
T  26935618 ttttcataatctattctaaagagcttatggaaataagctgaaaacagctt 26935569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 39345422 - 39345475
Alignment:
Q  457 ttatatataagctatttttgtaacaaacaataaagtcaaactgttttcatataa 510  Q
    |||| ||||||||||||  ||||||||  ||| |||||||||||||||||||||    
T  39345422 ttatgtataagctatttcagtaacaaaagatagagtcaaactgttttcatataa 39345475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 582
Target Start/End: Complemental strand, 44151578 - 44151482
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||| ||||||||| ||||||| || | ||||||||||||||| ||||  |  | || |||||||||||| ||||||||| ||| |||| ||||    
T  44151578 aataaagtaaaactgtttccatataagctat-aagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgt 44151482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 45078217 - 45078258
Alignment:
Q  442 ttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    ||||||||| ||||||||| |||||||||||||| |||||||    
T  45078217 ttatcatataagtgcttatgtataagctatttttataacaaa 45078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 550 - 657
Target Start/End: Original strand, 6859 - 6966
Alignment:
Q  550 tggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaa 649  Q
    |||||||||||| |||||| ||  |||| |||| | ||||||||||||||||| ||  ||||||||||| | ||| ||||||||||||||||| ||| ||    
T  6859 tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaa 6958  T
Q  650 acagaccc 657  Q
    ||||||||    
T  6959 acagaccc 6966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 489 - 568
Target Start/End: Original strand, 16889711 - 16889789
Alignment:
Q  489 aagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    ||||||||||||||| ||| || || | ||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  16889711 aagtcaaactgtttttatagaagctat-aagctgttttcataagctatgctagagagtttatggaaataatctgaaaaca 16889789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 485 - 582
Target Start/End: Complemental strand, 28586864 - 28586768
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||||||||||||||||| || |||| |||||| |  |||||| |||||||| |||| ||||||| |||||||||||||  ||||||||    
T  28586864 aataaagtcaaactgttttcatataaa-ttataagctgttttgacgagctatcctagagagcttatcgaaataagctgaaaacagcttacggatatgt 28586768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 590
Target Start/End: Complemental strand, 40205156 - 40205068
Alignment:
Q  499 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagct 590  Q
    |||||||||||||||   |||||||||||||||||||| || ||||| |||| ||||||| |||||||||| || |||| |||||| |||||    
T  40205156 gttttcatataaact---aagttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagct 40205068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 655
Target Start/End: Original strand, 34198528 - 34198575
Alignment:
Q  608 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagac 655  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  34198528 aagtgtttatgttagtaaataaactcaaataagtcaatccaaacagac 34198575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 414 - 483
Target Start/End: Original strand, 33961599 - 33961668
Alignment:
Q  414 cttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    |||||||||||||||||| |||||||||||||||||| |||| || | |||||| || |||| |||||||    
T  33961599 cttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataaggtacttttataacaaa 33961668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 499 - 572
Target Start/End: Complemental strand, 37588444 - 37588372
Alignment:
Q  499 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||| || | |||||||||||||||| ||| || ||||| |||||||||||| |||||||||||||    
T  37588444 gttttcatataagctat-aagttgttttcataagttattctggagagcttatggaaataagctgaaaacagctt 37588372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 505
Target Start/End: Original strand, 26516181 - 26516285
Alignment:
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaacaataaagtcaaactgt 500  Q
    |||||| || || |||||||||| | |||||  |||||| |||||||||| ||||||||| |||||||||||| |  ||||||  ||||| | |||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaaactgt 26516280  T
Q  501 tttca 505  Q
    |||||    
T  26516281 tttca 26516285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 513
Target Start/End: Original strand, 29281088 - 29281159
Alignment:
Q  441 cttatcatattagtgcttatatataagctatttttgtaacaaacaataaagtcaaactgttttcatataaact 513  Q
    |||||| ||| ||| ||||||||||| |||||||| ||||||| |||||||||||  ||||||||||||||||    
T  29281088 cttatcgtataagtacttatatataaactatttttataacaaa-aataaagtcaacttgttttcatataaact 29281159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 11684346 - 11684472
Alignment:
Q  441 cttatcatattagtgcttatatataagctatttttgtaacaaacaataa---agtcaaactgttttcatataaacttttaagttgttttcataagctatg 537  Q
    |||||||||| |||||| || |||||||||||||| |||||||  ||||   ||| ||||||||||||||        |||| | |||||||||||||||    
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcata--------taagctattttcataagctatg 11684437  T
Q  538 ctagagagtttatggaaataaactgaaaacagctt 572  Q
    || ||||| ||| ||||||||  ||||||||||||    
T  11684438 ctggagagcttacggaaataagttgaaaacagctt 11684472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 14295478 - 14295564
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||||||||||||| | | |||| ||||||| |||||||| || ||||| || | ||| ||| |||||||||||||    
T  14295478 aataaagtcaaactgttttcatataagc-tataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaacagctt 14295564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 416 - 580
Target Start/End: Original strand, 29588778 - 29588945
Alignment:
Q  416 taattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaacaataaagtca----aactgttttcatataaa 511  Q
    |||||||| | |||||  |||| ||||| | |||| ||||||||| |||||||||||| | |||||||  ||||| | |    || |||||||||||||     
T  29588778 taattaagcgcttatagcataaacactttttatataagtgcttatgtataagctatttctataacaaaatataaaataatgaaaattgttttcatataag 29588877  T
Q  512 cttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatat 580  Q
    || | |||| |||||| ||||||||| |  ||||||||||||||||| ||||||| ||| | |||||||    
T  29588878 ctataaagt-gttttcgtaagctatgttgaagagtttatggaaataagctgaaaatagcctatggatat 29588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 31030264 - 31030148
Alignment:
Q  452 agtgcttatatataagctatttttgtaacaaa---caataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagttt 548  Q
    ||||||||| |||||||||||||| |||||||    |||||||||||  |||| |||||||| | | ||||| |||||| |||||| | || ||||| ||    
T  31030264 agtgcttatgtataagctatttttataacaaatttaaataaagtcaagttgttatcatataagc-tataagtagttttcctaagctgtcctggagagctt 31030166  T
Q  549 atggaaataaactgaaaa 566  Q
    |||||||||| |||||||    
T  31030165 atggaaataagctgaaaa 31030148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 36318773 - 36318832
Alignment:
Q  513 ttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||||||||||||||||  | |||| |||||| |||||| |||||||||||||    
T  36318773 ttttaagttgttttcataagctatcttggagaatttatgtaaataagctgaaaacagctt 36318832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 582
Target Start/End: Complemental strand, 15074817 - 15074751
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||||||| ||| || || || |||||||||||| ||||||||||||| |||| ||||    
T  15074817 taagttgttttcataagttatactggaaagcttatggaaataagctgaaaacagcttatggacatgt 15074751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 572
Target Start/End: Complemental strand, 37526283 - 37526211
Alignment:
Q  499 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||| || | |||||||||||||||| | | || ||||| |||||||||||| |||||||||||||    
T  37526283 gttttcatataagctat-aagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagctt 37526211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 569
Target Start/End: Original strand, 8985633 - 8985716
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacag 569  Q
    |||||||||||||| |||||||||||  ||  ||| | |||||||||||||| ||| |||| ||||||||| || ||||||||||    
T  8985633 aataaagtcaaactattttcatataat-ttgcaagctattttcataagctatcctatagagcttatggaaagaagctgaaaacag 8985716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 435 - 566
Target Start/End: Original strand, 36539663 - 36539798
Alignment:
Q  435 taagcacttatcatattagtgcttatatataagctatttttgtaacaaac-----aataaagtcaaactgttttcatataaacttttaagttgttttcat 529  Q
    |||| ||||||||||| ||||||||| | |||||||||| | || ||||      ||||||||||| |||||||||||||| | | ||||||||||| ||    
T  36539663 taagaacttatcatataagtgcttatgtgtaagctatttgtttatcaaaagataaaataaagtcaacctgttttcatataagc-tataagttgtttttat 36539761  T
Q  530 aagctatgctagagagtttatggaaataaactgaaaa 566  Q
    ||| ||| ||  |||| || ||| |||||||||||||    
T  36539762 aagttattctgaagagcttttggtaataaactgaaaa 36539798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 37611279 - 37611227
Alignment:
Q  520 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||||  | ||||| |||||||||||| |||||||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagctt 37611227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 37788009 - 37787957
Alignment:
Q  520 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||||  | ||||| |||||||||||| |||||||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagctt 37787957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 568
Target Start/End: Complemental strand, 10272525 - 10272447
Alignment:
Q  489 aagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||| ||||||| ||||| || | ||||||||||||||||| ||  | ||||||||||| |||||| |||||||||    
T  10272525 aagtcaaattgttttcgtataagctat-aagttgttttcataagccatcttggagagtttatgaaaataagctgaaaaca 10272447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Complemental strand, 12074394 - 12074355
Alignment:
Q  623 taaataaactcaaataagtcgatccaaacagacccttagt 662  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  12074394 taaataaactcaaataagtcaatccaaacagacctttagt 12074355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 568
Target Start/End: Complemental strand, 15003612 - 15003530
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||| ||||||| | ||||||||| || | |||| ||||||||||||||| | |||||| |||||||||||||  |||||||    
T  15003612 aataaaatcaaactctcttcatataagctat-aagtggttttcataagctatccaagagagcttatggaaataaatcgaaaaca 15003530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 567
Target Start/End: Original strand, 17368678 - 17368729
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaac 567  Q
    |||||||||||||||||||||  | ||||| |||||||||||| ||||||||    
T  17368678 taagttgttttcataagctatcttggagaggttatggaaataagctgaaaac 17368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 511
Target Start/End: Complemental strand, 20982322 - 20982207
Alignment:
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaa-----acaataaagtcaa 495  Q
    |||||| || || ||| |||||||| |||||  |||||  |||||||||| ||||||||| |||||||||||| | ||||||     | |||||||||||    
T  20982322 tttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtcaa 20982223  T
Q  496 actgttttcatataaa 511  Q
     | |||||||||||||    
T  20982222 cccgttttcatataaa 20982207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 572
Target Start/End: Original strand, 36638754 - 36638805
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||| ||| |||||||| |||||||||||| ||||||| |||||    
T  36638754 tgttttcataagttatcctagagagcttatggaaataagctgaaaaaagctt 36638805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 41277448 - 41277398
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    |||||||||||||||||||||||| || ||  ||||||||||||||||||||    
T  41277448 aataaagtcaaactgttttcatat-aagttaaaagttgttttcataagctat 41277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 441 - 483
Target Start/End: Original strand, 1961915 - 1961957
Alignment:
Q  441 cttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    |||||||||| ||||| |||||||||||||||||| |||||||    
T  1961915 cttatcatataagtgcctatatataagctatttttataacaaa 1961957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 6738580 - 6738522
Alignment:
Q  415 ttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctattt 473  Q
    ||||||||| |||||||  |||| |||||||||||| ||| ||||| ||||||||||||    
T  6738580 ttaattaagagtttatagcataaacacttatcatataagtacttatgtataagctattt 6738522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 640
Target Start/End: Original strand, 40534284 - 40534338
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataag 640  Q
    ||||||||| ||||||| ||  ||||||||||||  |||||||||||||||||||    
T  40534284 aagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaaataag 40534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 642
Target Start/End: Complemental strand, 1084121 - 1084068
Alignment:
Q  589 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtc 642  Q
    ||||| |||||||||||  ||||| ||||||  |||||||||||||||||||||    
T  1084121 ctctctcaaacagtttcacaagtgcttatgtcagtaaataaactcaaataagtc 1084068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 582
Target Start/End: Original strand, 2468406 - 2468499
Alignment:
Q  489 aagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||  |||||||||| || || | ||||| |||| ||||||||| ||  ||||||||||||| ||| || |||||||||| |||| ||||    
T  2468406 aagtcaatttgttttcataaaagctgtaaagttctttttataagctatcctgaagagtttatggaagtaagctcaaaacagcttatggacatgt 2468499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 10391269 - 10391318
Alignment:
Q  434 ataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    |||| |||||||||||| ||||||||  |||||||||||||| |||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttataacaaa 10391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 19138816 - 19138733
Alignment:
Q  486 ataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgcta--gagagtttatggaaataaactgaaaaca 568  Q
    ||||| ||||| |||||||| |||| || | ||||||||||||||||||||  ||  ||||| |||||||||||| |||||||||    
T  19138816 ataaattcaaattgttttcagataagctat-aagttgttttcataagctattatatggagagcttatggaaataagctgaaaaca 19138733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 572
Target Start/End: Original strand, 19369295 - 19369371
Alignment:
Q  495 aactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||||||||||| | ||| || |||||||| || | | |||||| |||| |||||||| ||||||||||||    
T  19369295 aactgttttcatataaactat-aagctggtttcataaactttcccagagagcttatagaaataaattgaaaacagctt 19369371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 30653437 - 30653388
Alignment:
Q  523 ttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||| | ||||| || |||||||||||| |||||||||||||    
T  30653437 ttttcataagcttttctagacagcttatggaaataagctgaaaacagctt 30653388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 30257655 - 30257741
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||| |||| || ||| | |||| ||||||| |||||||||||||    
T  30257655 aataaagtcaaactgtttccatataagcttt-aagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagctt 30257741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 583
Target Start/End: Original strand, 4215344 - 4215441
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtt 583  Q
    |||||||||||||||||||||||||||| | | ||| |||||| |||| ||| || ||||||||||| ||||||  |||||||||  | ||||||||||    
T  4215344 aataaagtcaaactgttttcatataaac-tatgagtcgttttcgtaagttatccttgagagtttatgcaaataaggtgaaaacagtgtatggatatgtt 4215441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 575
Target Start/End: Complemental strand, 7218172 - 7218083
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtg 575  Q
    |||||||||||| ||||||||||||| || | ||||||||||||||| |||| || ||||  ||||| ||||||  |||||||||||||||    
T  7218172 aataaagtcaaattgttttcatataagctat-aagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtg 7218083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 5157157 - 5157221
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaa 650  Q
    ||||||||||||||||||||  |||||||||||| |||| ||||  ||||||||||| |||||||    
T  5157157 aagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaa 5157221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 568
Target Start/End: Original strand, 25479583 - 25479635
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    ||||||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  25479583 taagttgttttcataagctatcctagagagcttatgaaaataagctgaaaaca 25479635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 582
Target Start/End: Original strand, 6279335 - 6279467
Alignment:
Q  449 attagtgcttatatataagctatttttgtaacaaacaataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagttt 548  Q
    |||||||||||| ||||||||| ||||   | | | ||||||  |||| ||||||| ||||| |||| || |  |||||||||||||| |||||||| ||    
T  6279335 attagtgcttatgtataagctaattttaggagataaaataaaaacaaattgttttcgtataagctttaaacta-ttttcataagctatcctagagagctt 6279433  T
Q  549 atggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||  ||||||||| ||| |||| ||||    
T  6279434 atggaaatacgctgaaaacaacttatggacatgt 6279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 568
Target Start/End: Original strand, 15361687 - 15361767
Alignment:
Q  487 taaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||| | ||||||||||| || | ||| |||||||||||| ||| || |||||||||||||| ||| |||||||||    
T  15361687 taaagtcaaattattttcatataagctat-aagctgttttcataagatattcttgagagtttatggaattaagctgaaaaca 15361767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 572
Target Start/End: Original strand, 4200128 - 4200287
Alignment:
Q  417 aattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaa-----acaataaagtcaaactgttttcatataaa 511  Q
    |||||||||  ||||  ||||||||||||||| | |||| ||||||||||| ||||||| ||||||     | |||||||||||  |||||||||||||     
T  4200128 aattaagtgcgtatagcataagcacttatcatctaagtgtttatatataagttatttttataacaaaagataaaataaagtcaagttgttttcatataag 4200227  T
Q  512 cttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    | | ||  |||||||| |||| ||| || ||| | ||||| |||||| || ||||||||||    
T  4200228 c-tatatattgttttcgtaagatatcctggagggcttatgaaaataagcttaaaacagctt 4200287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 493 - 577
Target Start/End: Complemental strand, 12564964 - 12564881
Alignment:
Q  493 caaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    |||||||||||||||||| || | ||||||||||||||||||||  |  || | ||| |||||||| ||||||||||||| ||||    
T  12564964 caaactgttttcatataagctat-aagttgttttcataagctatcttttagtgcttacggaaataagctgaaaacagcttatgga 12564881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 51929843 - 51929787
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||| |||||||||||||||| |||||||| |||||||||||| | |||| ||||||    
T  51929843 taagctgttttcataagctattctagagagcttatggaaataagccgaaatcagctt 51929787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 3924604 - 3924678
Alignment:
Q  493 caaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||||| ||||| || ||| |||||||| ||||||||| ||  ||||||||||||||||| | |||||||    
T  3924604 caaactgttttcgtataatctatta-gttgtttttataagctatcctgaagagtttatggaaataagccgaaaaca 3924678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 19462864 - 19462814
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    ||||||||||||| |||||||||||||| | ||| |||||||||||||||||    
T  19462864 aataaagtcaaacagttttcatataaac-tgtaaattgttttcataagctat 19462814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 25006132 - 25006082
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    |||||||||||| ||||||||||||| | | |||||||||||||||||||||    
T  25006132 aataaagtcaaattgttttcatataagc-tataagttgttttcataagctat 25006082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 652
Target Start/End: Original strand, 28467521 - 28467584
Alignment:
Q  589 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaaca 652  Q
    |||||||||| ||| || |||||| | ||| | ||||||||||||||||||||| |||||||||    
T  28467521 ctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaatccaaaca 28467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 533
Target Start/End: Complemental strand, 40751220 - 40751181
Alignment:
Q  494 aaactgttttcatataaacttttaagttgttttcataagc 533  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  40751220 aaactattttcatataaactattaagttgttttcataagc 40751181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 568
Target Start/End: Original strand, 45205040 - 45205122
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||||||| ||| ||||||| ||   ||||||||||||||||||||  |  |||||| |||||||||| |||||||||    
T  45205040 aataaagtcaaactatttccatataagctag-aagttgttttcataagctatcatgtagagttcatggaaataagctgaaaaca 45205122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 5924057 - 5924099
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataa 558  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||    
T  5924057 taagttgttttcataagttatcctagagagcttatggaaataa 5924099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 536
Target Start/End: Original strand, 8130409 - 8130458
Alignment:
Q  486 ataaagtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    |||||||||||||||||||| |||| | | |||||||||||||||||||||    
T  8130409 ataaagtcaaactgttttcacataagc-tataagttgttttcataagctat 8130458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 33723479 - 33723398
Alignment:
Q  486 ataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    ||||||||||| |||||||||||||||| | ||  |||||||||||||||  ||  | || |||||||||||| |||||||||    
T  33723479 ataaagtcaaattgttttcatataaactatgaa-ctgttttcataagctaccctgtaaagcttatggaaataagctgaaaaca 33723398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 49560746 - 49560664
Alignment:
Q  401 tttggacaatcatcttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    |||||| || || |||| |||||||||||||  ||| ||||| ||||||| |||||||||||||||  ||||| | |||||||    
T  49560746 tttggataaacaacttacttaagtgtttatagcatatgcactaatcatataagtgcttatatataatatatttatataacaaa 49560664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 517 - 555
Target Start/End: Original strand, 50319273 - 50319311
Alignment:
Q  517 aagttgttttcataagctatgctagagagtttatggaaa 555  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  50319273 aagttgttttcataagctatcctagagagcttatggaaa 50319311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 535
Target Start/End: Complemental strand, 5756783 - 5756735
Alignment:
Q  486 ataaagtcaaactgttttcatataaacttttaagttgttttcataagcta 535  Q
    ||||||| |||||||||||||||||| || |||||||||||| |||||||    
T  5756783 ataaagttaaactgttttcatataaa-ttataagttgttttcgtaagcta 5756735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 558
Target Start/End: Original strand, 17269222 - 17269294
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataa 558  Q
    |||||||||||| ||||||||||||| |  | |||||||||||||||||||| || ||||| ||| || |||||    
T  17269222 aataaagtcaaattgttttcatataagcaat-aagttgttttcataagctatcctggagagcttacggtaataa 17269294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 558
Target Start/End: Complemental strand, 27738278 - 27738206
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataa 558  Q
    |||||||||||| ||||||||||||| | | ||| ||||||||||||||||| |  ||||| ||||||| ||||    
T  27738278 aataaagtcaaattgttttcatataagc-tataatttgttttcataagctatacaggagagcttatggatataa 27738206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 566
Target Start/End: Complemental strand, 28467405 - 28467326
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaa 566  Q
    |||||||||||| | ||||||||||| ||   ||||||||||||||||||| ||||||||| |||| |||| || |||||||    
T  28467405 aataaagtcaaattattttcatataagctac-aagttgttttcataagcta-gctagagagcttattgaaaaaagctgaaaa 28467326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 46504387 - 46504322
Alignment:
Q  418 attaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    ||||||||||||||  |||||| |||||||||| |||| || | ||||| |||||||| |||||||    
T  46504387 attaagtgtttatagcataagctcttatcatataagtgtttgtctataaactatttttataacaaa 46504322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 47598489 - 47598428
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    ||||||||||||||||||||| || ||||| |||||| || || ||||||||| ||| ||||    
T  47598489 taagttgttttcataagctatcctggagagcttatggcaacaagctgaaaacaacttatgga 47598428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 483
Target Start/End: Original strand, 31461574 - 31461643
Alignment:
Q  414 cttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    |||||||||||| |||||||||||||||||||  ||| ||||||||| |||||||||||| | |||||||    
T  31461574 cttaattaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaa 31461643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 488 - 572
Target Start/End: Original strand, 2117378 - 2117461
Alignment:
Q  488 aaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||| ||||||||||| || | |||||||||||||||| ||| |||||||| |||| ||||||| || ||||||||||    
T  2117378 aaagtcaaactattttcatataatctat-aagttgttttcataagttatcctagagagcttattgaaataagctaaaaacagctt 2117461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 3217360 - 3217299
Alignment:
Q  418 attaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaa 479  Q
    |||||||| ||||| |||||||  ||||||||| ||||||||| ||||||||||||||||||    
T  3217360 attaagtgcttatagtataagcgattatcatataagtgcttatgtataagctatttttgtaa 3217299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 568
Target Start/End: Complemental strand, 281946 - 281864
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||||  ||||||||||||| || | ||| ||| |||||||||||| |||||||| | |||||||||| |||||||||    
T  281946 aataaagtcaacttgttttcatataagctat-aagctgtgttcataagctatcctagagagctcatggaaataagctgaaaaca 281864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 566
Target Start/End: Original strand, 4006686 - 4006766
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaa 566  Q
    |||||||||||| |||||| |||||| || | |||||||||||||||||||| |  ||||| ||||| |||||| |||||||    
T  4006686 aataaagtcaaattgtttttatataagctat-aagttgttttcataagctatccctgagaggttatgaaaataagctgaaaa 4006766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 518 - 602
Target Start/End: Complemental strand, 5564194 - 5564110
Alignment:
Q  518 agttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagt 602  Q
    ||||||||||||||||| |  |  |||||||||| |||||| |||||||||||||  ||| |||| | ||| |||||||||||||    
T  5564194 agttgttttcataagctgtcttgaagagtttatgcaaataagctgaaaacagctttcggacatgtcataagatctcccaaacagt 5564110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 20671963 - 20671878
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||| ||||||| ||||| | ||||| |||||||||||| ||||  ||||||| || ||||| ||| |||||||||||||    
T  20671963 aataaagtcaaattgttttcgtataagc-tttaaattgttttcataaactatcatagagagctt-tggaagtaagctgaaaacagctt 20671878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 568
Target Start/End: Original strand, 34939755 - 34939798
Alignment:
Q  525 ttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||||| || |||||||||||||||||| |||||||||    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaaca 34939798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 4420617 - 4420701
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||| ||||  ||||| ||   ||||| ||||| ||||||||  | ||||| |||||||||||| |||||||||||||    
T  4420617 aataaagtcaaactatttttgtataagct---aagttattttcctaagctatcttggagagcttatggaaataagctgaaaacagctt 4420701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 7931854 - 7931805
Alignment:
Q  519 gttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||| ||||||| ||| |||| |||||||||||| |||||||||    
T  7931854 gttgttttcacaagctatcctatagagcttatggaaataagctgaaaaca 7931805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 572
Target Start/End: Original strand, 8010281 - 8010415
Alignment:
Q  442 ttatcatattagtgcttatatataagctatttttgtaacaa----acaataaagtcaaactgttttcatataaacttttaagttgttttcataagctatg 537  Q
    ||||||||| ||||||||  |||||||||||| | ||||||    | ||||||||||| ||  |||||| | || || |||| |||||| ||||| |||     
T  8010281 ttatcatataagtgcttaggtataagctatttctataacaacaataaaataaagtcaatctactttcattttaagttataagctgttttaataagttatc 8010380  T
Q  538 ctagagagtttatggaaataaactgaaaacagctt 572  Q
    || ||||  |||| ||||||||||||||| |||||    
T  8010381 ctggagaacttatagaaataaactgaaaatagctt 8010415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 582
Target Start/End: Complemental strand, 8420295 - 8420199
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    |||||||||||||||| || ||||||| | | ||| |||| || ||||||||  | ||||| ||||||||||||  |||||| |||||||||| ||||    
T  8420295 aataaagtcaaactgtgtttatataaaatat-aagctgttctcgtaagctataatggagagcttatggaaataagttgaaaatagcttgtggacatgt 8420199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 582
Target Start/End: Complemental strand, 19275699 - 19275638
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||||||  |  |||| |||||||||||||| |||| ||||||||||| ||||    
T  19275699 tgttttcataagctatcatgaagagcttatggaaataaaccgaaatcagcttgtggacatgt 19275638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 639
Target Start/End: Original strand, 27857443 - 27857496
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataa 639  Q
    ||||||||||||||||||||  |||||| |||||  ||| ||||||||||||||    
T  27857443 aagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaataa 27857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 483
Target Start/End: Complemental strand, 31668839 - 31668790
Alignment:
Q  434 ataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    ||||||| ||||||||| ||||||||| |||||||||||| | |||||||    
T  31668839 ataagcaattatcatataagtgcttatgtataagctatttctataacaaa 31668790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 483
Target Start/End: Complemental strand, 33068735 - 33068666
Alignment:
Q  414 cttaattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaa 483  Q
    ||||||||||||||||||  |||||| ||||||| || | ||||||| |||||| ||||| | |||||||    
T  33068735 cttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaa 33068666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 498 - 582
Target Start/End: Complemental strand, 22214744 - 22214661
Alignment:
Q  498 tgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||| || | |||||||||||||||||||| |||||||  ||| |||||||| ||||||||||||| |||| ||||    
T  22214744 tgttttcatataacctat-aagttgttttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgt 22214661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 485 - 577
Target Start/End: Complemental strand, 36646480 - 36646389
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    ||||||||  || |||||||||||||  || ||| ||||||||||||||||| ||||||||||||| |||||||  |||||||||||| ||||    
T  36646480 aataaagtataattgttttcatataag-ttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatgga 36646389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 521 - 652
Target Start/End: Complemental strand, 13709886 - 13709755
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgtt 620  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||| ||| ||||  ||| | || |||||| ||| ||| ||  ||||| ||||       
T  13709886 tgttttcataagctatcctggagagtttattgaaataaactgaaaacaacttatggacttgtcataaactctcctaaatagtctcacaagtgcttatccc 13709787  T
Q  621 cgtaaataaactcaaataagtcgatccaaaca 652  Q
     ||| ||||| |||||||||||||| ||||||    
T  13709786 agtagataaattcaaataagtcgatgcaaaca 13709755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 520 - 601
Target Start/End: Original strand, 31403153 - 31403234
Alignment:
Q  520 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacag 601  Q
    ||||||| ||||||||| |||||||||| |||| ||||| ||||||||||||| |||| |||  | |||||||| |||||||    
T  31403153 ttgttttgataagctatcctagagagttcatggtaataagctgaaaacagcttatggacatgacataagctctctcaaacag 31403234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 569
Target Start/End: Complemental strand, 24887381 - 24887298
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacag 569  Q
    |||||||||||||||| ||||||||| ||   ||| |||||||||||||||| || ||||| |||||| ||||| ||||||||||    
T  24887381 aataaagtcaaactgtattcatataagctaa-aagctgttttcataagctatcctggagagcttatgggaataagctgaaaacag 24887298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 499 - 570
Target Start/End: Complemental strand, 14548805 - 14548735
Alignment:
Q  499 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagc 570  Q
    |||||||||||| || | |||||||||||||||| ||| || ||||| |||||||||||| |||||||||||    
T  14548805 gttttcatataagctat-aagttgttttcataagttattctggagagcttatggaaataagctgaaaacagc 14548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 30923961 - 30923910
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||| |||| ||||||||||||| ||||||| |||||||||||||    
T  30923961 tgttttcataacctatcctagagagtttatagaaataagctgaaaacagctt 30923910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 41452495 - 41452581
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||||||||||| |  || |||| |||||||||||||||| || ||||  || |||||||||  ||||||||||||    
T  41452495 aataaagtcaaactgttttcatattag-ttgtaagctgttttcataagctatcctggagaagttgtggaaataaggtgaaaacagctt 41452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 577
Target Start/End: Original strand, 237399 - 237460
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 577  Q
    ||||||||||||||||| ||| ||| |||| ||| |||||||| ||||||||||||| ||||    
T  237399 taagttgttttcataagttatcctatagagcttacggaaataagctgaaaacagcttatgga 237460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 1816555 - 1816639
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagc 570  Q
    |||||||||||||||||||  ||| ||  | ||||||||||||||||||||| || ||||| ||||  |||||| |||||||||||    
T  1816555 aataaagtcaaactgtttttgtat-aagatataagttgttttcataagctatactggagagcttatcaaaataagctgaaaacagc 1816639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 662
Target Start/End: Complemental strand, 12923496 - 12923250
Alignment:
Q  417 aattaagtgtttatattataagcacttatcatattagtgcttatatataagctatttttgtaacaaac-----aataaagtcaaactgttttcatataaa 511  Q
    ||||| ||||||||||| ||| | ||| | |||| ||||||| | |||||||||||  ||||| |||      ||||||||||||||| |||| |||||     
T  12923496 aattatgtgtttatattctaaccccttgtgatataagtgcttgtgtataagctattgctgtaataaaagataaaataaagtcaaactgctttcttataag 12923397  T
Q  512 cttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagt 611  Q
    || | ||||||||||| |||| ||   |||| |  || |  |||||| ||||||||| ||| |||| |||| | ||||||||||||||||| ||    ||    
T  12923396 ctat-aagttgttttcctaagttaccttagaaaacttctataaataagctgaaaacaacttatggacatgtcataagctctcccaaacagtctc---ggt 12923301  T
Q  612 gtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagt 662  Q
    | ||||||| ||| |||||||||||||| || ||| |||||  ||||||||    
T  12923300 gcttatgttagtagataaactcaaataactcaatcaaaacatgcccttagt 12923250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 30322088 - 30322032
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    ||||||||||||||||| ||| ||| |||| ||||||||||||| |||| |||||||    
T  30322088 taagttgttttcataagttatcctaaagagcttatggaaataaattgaacacagctt 30322032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 568
Target Start/End: Complemental strand, 40122850 - 40122769
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 568  Q
    |||||||||||||||||||||||  ||  | ||||||||||| ||||||||| ||| | |||| |||||||||| || ||||||    
T  40122850 aataaagtcaaactgttttcata--aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaaca 40122769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 659973 - 659934
Alignment:
Q  433 tataagcacttatcatattagtgcttatatataagctatt 472  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  659973 tataagcacttatcatataaatgcttatatataagctatt 659934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 575
Target Start/End: Original strand, 21367669 - 21367728
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtg 575  Q
    |||||||||||||||||||||  | ||||  ||||| |||||| ||||||||||||||||    
T  21367669 taagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtg 21367728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 564
Target Start/End: Original strand, 23315598 - 23315676
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaa 564  Q
    |||||||||||| ||||||||||||  || | ||| ||||| |||||||||| ||| |||| |||||||||||| |||||    
T  23315598 aataaagtcaaattgttttcatataggctat-aagatgtttccataagctattctaaagagcttatggaaataagctgaa 23315676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 28306130 - 28306180
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    |||||||||||||||||||||||| || ||  ||||||||||||||||||||    
T  28306130 aataaagtcaaactgttttcatat-aagttacaagttgttttcataagctat 28306180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 474
Target Start/End: Complemental strand, 28843018 - 28842971
Alignment:
Q  427 ttatattataagcacttatcatattagtgcttatatataagctatttt 474  Q
    |||||| |||||| |||||||||| ||||||||| |||||||||||||    
T  28843018 ttatatcataagcgcttatcatataagtgcttatgtataagctatttt 28842971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 490
Target Start/End: Complemental strand, 49772817 - 49772766
Alignment:
Q  439 cacttatcatattagtgcttatatataagctatttttgtaacaaacaataaa 490  Q
    |||||||||||| |||| |||| |||||||||||||||||| ||| ||||||    
T  49772817 cacttatcatataagtgtttatgtataagctatttttgtaataaaaaataaa 49772766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 653
Target Start/End: Complemental strand, 49845525 - 49845458
Alignment:
Q  586 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 653  Q
    ||||||||||||| |||||| ||||| |||||  | ||| |||| |||||||||||| ||||||||||    
T  49845525 aagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaacag 49845458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 590 - 652
Target Start/End: Complemental strand, 30321999 - 30321937
Alignment:
Q  590 tctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaaca 652  Q
    |||||||||||||||| || ||||||||||  |||||||| |||||| ||||  |||||||||    
T  30321999 tctcccaaacagtttcataggtgtttatgtcagtaaataagctcaaagaagttcatccaaaca 30321937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 579
Target Start/End: Complemental strand, 44284143 - 44284085
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggata 579  Q
    |||||||||||||||| || ||||| |||| ||||||| ||||||| ||||| ||||||    
T  44284143 tgttttcataagctatcctggagagcttatagaaataagctgaaaatagcttatggata 44284085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 567
Target Start/End: Original strand, 48528563 - 48528609
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataaactgaaaac 567  Q
    |||||||||||||||| || |||||||||| ||||||| ||||||||    
T  48528563 tgttttcataagctattctggagagtttatagaaataagctgaaaac 48528609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 16790507 - 16790462
Alignment:
Q  437 agcacttatcatattagtgcttatatataagctatttttgtaacaa 482  Q
    |||| ||||||||| ||||||||| |||||||||||||| ||||||    
T  16790507 agcatttatcatataagtgcttatgtataagctatttttataacaa 16790462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 569
Target Start/End: Original strand, 37138292 - 37138345
Alignment:
Q  516 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacag 569  Q
    |||||| ||||||||||||||  ||||||||||| | |||||| ||||||||||    
T  37138292 taagttattttcataagctatcttagagagtttaggaaaataagctgaaaacag 37138345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 558
Target Start/End: Complemental strand, 39311742 - 39311705
Alignment:
Q  521 tgttttcataagctatgctagagagtttatggaaataa 558  Q
    |||||||||||||||| || ||||||||||||||||||    
T  39311742 tgttttcataagctatactggagagtttatggaaataa 39311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 475
Target Start/End: Original strand, 41671252 - 41671293
Alignment:
Q  434 ataagcacttatcatattagtgcttatatataagctattttt 475  Q
    ||||||||||||||||| |||| ||||||||| |||||||||    
T  41671252 ataagcacttatcatataagtgattatatatacgctattttt 41671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 657
Target Start/End: Complemental strand, 41848679 - 41848630
Alignment:
Q  608 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccc 657  Q
    ||||||||||||| ||| ||||||||||||||||| ||| ||| ||||||    
T  41848679 aagtgtttatgttagtagataaactcaaataagtcaatctaaatagaccc 41848630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 582
Target Start/End: Complemental strand, 48049049 - 48048984
Alignment:
Q  517 aagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 582  Q
    ||||||||||||| ||||||  | | ||| |||||||||||| ||||||||||||| |||| ||||    
T  48049049 aagttgttttcattagctatcttggggaggttatggaaataagctgaaaacagcttatggacatgt 48048984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 306329 - 306384
Alignment:
Q  517 aagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 572  Q
    |||||||||||||||||||| |||||||| ||||| || ||| |||||||||||||    
T  306329 aagttgttttcataagctatcctagagagcttatgtaagtaagctgaaaacagctt 306384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 555
Target Start/End: Complemental strand, 4321 - 4252
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaa 555  Q
    ||||||||||||| |||||||||||||| | |||| |||||| ||||||||||||||| || ||| |||||    
T  4321 aataaagtcaaaccgttttcatataaac-tataagctgttttaataagctatgctagaaagcttacggaaa 4252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 6792 - 6735
Alignment:
Q  433 tataagcacttatcatattagtgcttatatataagctatttttgtaacaaacaataaa 490  Q
    |||||||||||||||||| ||||||||| ||||| |||||| | ||||||| ||||||    
T  6792 tataagcacttatcatataagtgcttatgtataaactatttctataacaaaaaataaa 6735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 116711 - 116654
Alignment:
Q  433 tataagcacttatcatattagtgcttatatataagctatttttgtaacaaacaataaa 490  Q
    |||||||||||||||||| ||||||||| ||||| |||||| | ||||||| ||||||    
T  116711 tataagcacttatcatataagtgcttatgtataaactatttctataacaaaaaataaa 116654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 27548 - 27598
Alignment:
Q  485 aataaagtcaaactgttttcatataaacttttaagttgttttcataagctat 536  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||| ||||    
T  27548 aataaagtcaaattgttttcatataaac-tataagttgttttcataaactat 27598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 671
Target Start/End: Complemental strand, 29704 - 29659
Alignment:
Q  626 ataaactcaaataagtcgatccaaacagacccttagttcataaaat 671  Q
    |||||||||||||||||||||| |||||||||| | ||| ||||||    
T  29704 ataaactcaaataagtcgatcctaacagaccctaatttcttaaaat 29659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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