View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15998_low_3 (Length: 382)
Name: NF15998_low_3
Description: NF15998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15998_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 126 - 364
Target Start/End: Complemental strand, 52543778 - 52543540
Alignment:
| Q |
126 |
catgttcttcttcttctccttcctctattcccatttttactccattcaccaacaacaacaatggcacccgttgatcctcactcatacacagactcaactc |
225 |
Q |
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| T |
52543778 |
catgttcttcttcttctccttcctctattcccatttttactccattcaccaacaacaacaatggcacccgttgatcctcattcatacacagattcaactc |
52543679 |
T |
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| Q |
226 |
acccaccaaccactcacatttccctcacactctacttagatttcccatcttcaaccattcatgcttctgcactcttcactctccaaacccctcactctgg |
325 |
Q |
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| T |
52543678 |
acccaccaaccactcacatttccctcacactctacttagatttcccatcttcaaccattcatgcttcagcacttttcactctccaaacccctcactctgg |
52543579 |
T |
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| Q |
326 |
tcctttcttcctcgacactcgttcccttgacatccactc |
364 |
Q |
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| T |
52543578 |
tcctttcttcctcgacactcgttcccttgacatccactc |
52543540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 52543871 - 52543824
Alignment:
| Q |
23 |
aaatcgtccttttatgcctttctctctctcaccgctaagaaaagaatcaa |
72 |
Q |
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| T |
52543871 |
aaatcgtccttttatgcctttctctctc--accgctaagaaaagaatcaa |
52543824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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