View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15998_low_4 (Length: 338)
Name: NF15998_low_4
Description: NF15998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15998_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 2218875 - 2218546
Alignment:
| Q |
6 |
tgaggtgaagtatgttaggattccctcaataacataagaacgtctcattctaaagtatgtgacaaatgacacgactttgttagtgcaaatgacaaaccta |
105 |
Q |
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| T |
2218875 |
tgaggtgaagcatgttaggattccctcaataacagatgaacgtctcattctaaagtatgtgacaaatgacacgactctgttagtccaaatgacgaaccta |
2218776 |
T |
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| Q |
106 |
aaatatagattaggctctctaggaattactcataccggagtgaatttgtatnnnnnnnnnnnnnnnntgggacaattcnnnnnnnnnccaaattactaac |
205 |
Q |
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| T |
2218775 |
aaatatagattaggctctctaggaattactcatactggagtgaatttgtataaaagacttgaaaaaatgggacaattc--tttttgtccaaattactaac |
2218678 |
T |
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| Q |
206 |
ctaaagtacaaaccaagctttctagggattactcacactgaagtgaacttgtat-----------aagtaagaataccattacgtattgcatca----at |
290 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
2218677 |
ctaaagtgcaaaccaagctttctagggattactcacactgaagtgaacttgtataaaaaacttgaaagtaagaataccattacgtattgcatcaatggat |
2218578 |
T |
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| Q |
291 |
ggatgtgtgtgttaaacttactacgctataat |
322 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
2218577 |
ggatgtgtgtgttaaacttactatgctataat |
2218546 |
T |
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