View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15998_low_5 (Length: 304)
Name: NF15998_low_5
Description: NF15998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15998_low_5 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 73 - 304
Target Start/End: Complemental strand, 12007400 - 12007169
Alignment:
| Q |
73 |
ggcaatcctttcaccgttctggcgagaatgaatctcctcatgtgagattttacaagagatatagaagagtgatctcacaccattaaagaagaaagttaaa |
172 |
Q |
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| T |
12007400 |
ggcaatcctttcacggttctgccgagaatgaatctcctcatgtgagattttacatgagatatagaagagtgatctcacaccattaaagaagaaagttaaa |
12007301 |
T |
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| Q |
173 |
actagttaatgctccattccaaatcaatttaatgcctactgcaaaacaacaagactaattccatctctagaaaaacttgcttcagctacacataacaggt |
272 |
Q |
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| T |
12007300 |
actagttaatgctccattccaaatcaatttaatgcctactgcaaaacaacaagactaattccatctctagaaaaatttgcttcagctacacataacaggt |
12007201 |
T |
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| Q |
273 |
tcttccttcactcccttacaaggtcaatttaa |
304 |
Q |
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| T |
12007200 |
tcttccttcactcccttacaaggtcaatttaa |
12007169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 11988630 - 11988349
Alignment:
| Q |
19 |
gtatccgaacttcaatattatattttggcttgacatctttgtttcatttccacgggcaatcctttcaccgttctggcgagaatgaatctcctcatgtgag |
118 |
Q |
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| T |
11988630 |
gtatctgatcttcagtcttatattttggctagagatctttgtttcacttcca-------tcctttcacggttctaccgaga-tgaatcccctcatgtgag |
11988539 |
T |
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| Q |
119 |
attttacaagagatatagaagagtgatctcacaccattaaagaagaaagttaaaactagttaatgctccattccaaatcaatttaatgcctactgcaaaa |
218 |
Q |
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| T |
11988538 |
attctaaatgacagagagaagtgtgatctcacaacattaaagaagagagttaaaactaggtgatgcaccattcctaatcaatttaatgcttcctgcaaac |
11988439 |
T |
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| Q |
219 |
caacaagactaattccatct---ctagaaa-aacttgcttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaa |
304 |
Q |
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| T |
11988438 |
caacatgacaaattccatcatcactataaagaacttgcttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaa |
11988349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 12019935 - 12019816
Alignment:
| Q |
186 |
ccattccaaatcaatttaatgcctactgcaaaacaacaagactaattccatctctagaaa-aacttgcttcagctacacataacaggttcttccttcact |
284 |
Q |
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| T |
12019935 |
ccattcctaatcaatttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgcttcagctacacatcaacgattcttccttcact |
12019836 |
T |
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| Q |
285 |
cccttacaaggtcaatttaa |
304 |
Q |
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| T |
12019835 |
cccttacaatgtcaatttaa |
12019816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 12007465 - 12007421
Alignment:
| Q |
26 |
aacttcaatattatattttggcttgacatctttgtttcatttcca |
70 |
Q |
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| T |
12007465 |
aacttcaatattatattttggcttgagatctttgtttcacttcca |
12007421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 293
Target Start/End: Complemental strand, 29444433 - 29444281
Alignment:
| Q |
142 |
tgatctcacaccattaaagaagaaagttaaaactagttaatgctccattccaaatcaatttaatgcctactgcaaaacaacaagactaattccatctcta |
241 |
Q |
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| T |
29444433 |
tgatctcacaccattcaagaagagatataaaaccaggtgatgctccattcctgatcaattcaacgcttcccgcgaatcaacatgactaaatccatcatta |
29444334 |
T |
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| Q |
242 |
gaaa-aacttgcttcagctacacataacaggttcttccttcactcccttacaa |
293 |
Q |
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| T |
29444333 |
gaaacaacttgcttcagctacgcatcaaaggttcttccttcactcccttacaa |
29444281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 29454363 - 29454277
Alignment:
| Q |
219 |
caacaagactaattccatctctagaaa-aacttgcttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaa |
304 |
Q |
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| T |
29454363 |
caacatgactaaatccatcactagaaacaacttgcttcagctacacatcaaagattcttccttcactccattacaatttcaatttaa |
29454277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 29422255 - 29422434
Alignment:
| Q |
96 |
gagaatgaatctcctcatgtgagattttacaagagatatagaagagtgatctcacaccattaaagaagaaagtt-aaaactagttaatgctccattccaa |
194 |
Q |
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||||||||||| |||| ||||||||||||| |||| | ||| ||||||| |||||| | ||||||| |||| |||||||| |||||||||| | |
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| T |
29422255 |
gagaatgaatcccctc--gtgagattttacatgagagggaaaagtgtgatcttacaccaatgaagaagagagttaaaaactaggcgatgctccatttcgg |
29422352 |
T |
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| Q |
195 |
atcaatttaatgcctactgcaaaacaacaagactaattccatctctagaaa-aacttgcttcagctacacataacaggttcttc |
277 |
Q |
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| T |
29422353 |
atcaatttaacgcttcccgcaaatcaacatgactaaatccatcactacaaacaactt--ttcagctacaaatcaaaggttcttc |
29422434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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