View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15998_low_6 (Length: 295)

Name: NF15998_low_6
Description: NF15998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15998_low_6
NF15998_low_6
[»] chr4 (4 HSPs)
chr4 (123-295)||(42225645-42225817)
chr4 (214-275)||(13508055-13508116)
chr4 (18-83)||(42225542-42225607)
chr4 (211-275)||(13507131-13507194)
[»] chr7 (2 HSPs)
chr7 (213-295)||(28557139-28557221)
chr7 (203-295)||(707736-707828)
[»] chr1 (3 HSPs)
chr1 (211-295)||(7384470-7384554)
chr1 (211-276)||(23573193-23573258)
chr1 (211-295)||(9419380-9419464)
[»] chr8 (1 HSPs)
chr8 (198-295)||(17707034-17707131)
[»] chr2 (1 HSPs)
chr2 (211-295)||(31559117-31559201)
[»] scaffold0140 (1 HSPs)
scaffold0140 (211-276)||(35887-35952)
[»] chr6 (1 HSPs)
chr6 (211-295)||(1134480-1134564)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 123 - 295
Target Start/End: Original strand, 42225645 - 42225817
Alignment:
Q  123 tcaggtctacttcatccctgttttttcttcttatccctaccatttttctcatctatttgcgcccctggaaaaacccaccacctcatggcaatgtcttctc 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  42225645 tcaggtcttcttcatccctgttttttcttcttatccctaccatttttctcatctatttgcgcctctggaaaaacccaccacctcatggcgatgtcttctc 42225744  T
Q  223 attccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  42225745 attccattgctaattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctc 42225817  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 13508116 - 13508055
Alignment:
Q  214 tgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaa 275  Q
    ||||||||||||||||| ||||||||| ||||||| | |||| |||||||||||||||||||    
T  13508116 tgtcttctcattccattactaattcatattcaattaagttgcctatatgtggttgcaacaaa 13508055  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 42225542 - 42225607
Alignment:
Q  18 agttgttgacaaacagagtcacacgtgatcaaaatcaaaaatgcaaattttcagacgaacgaattt 83  Q
    ||||| |||||||| ||||||||||||| ||||| |||||| |||||||| |||| | ||||||||    
T  42225542 agttgctgacaaacggagtcacacgtgaccaaaaccaaaaacgcaaatttgcagagggacgaattt 42225607  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 13507131 - 13507194
Alignment:
Q  211 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaa 275  Q
    ||||||||||| |||||||| ||||||||||||||| || | ||| ||| |||||||||||||||    
T  13507131 caatgtcttcttattccattactaattcatcttcaa-ttgagtgcctatttgtggttgcaacaaa 13507194  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 28557221 - 28557139
Alignment:
Q  213 atgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    |||||||||||||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||| | ||||| ||||||    
T  28557221 atgtcttctcattccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctc 28557139  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 707828 - 707736
Alignment:
Q  203 cctcatggcaatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    |||| |||||| |||||||| ||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||| | ||||| ||||||    
T  707828 cctcgtggcaaggtcttctcgttccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctc 707736  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 7384554 - 7384470
Alignment:
Q  211 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    ||||||||||||||| |||||||||||||||||||||| | |||| ||||||||  ||||||||||| |||| ||||| ||||||    
T  7384554 caatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctc 7384470  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 23573193 - 23573258
Alignment:
Q  211 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaa 276  Q
    |||||||| ||||||||||  | ||||||||||||| | || ||| ||| ||||||||||||||||    
T  23573193 caatgtctactcattccatgaccaattcatcttcaactgaaatgcctatttgtggttgcaacaaaa 23573258  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 9419464 - 9419380
Alignment:
Q  211 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    |||||||||||||||||||| || | ||||| |||||| | || | ||||  ||||| ||||||||| |||| ||||| ||||||    
T  9419464 caatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctc 9419380  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 17707131 - 17707034
Alignment:
Q  198 caccacctcatggcaatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    |||| |||| ||||||||||||||| ||||||||||||| |||| |||||| |||| | |||||||||  ||||||||||||| | ||||| ||||||    
T  17707131 caccccctcgtggcaatgtcttctccttccattgctaatacatcatcaattgaattacctatatgtgggcgcaacaaaatcataaggatgttcatctc 17707034  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 31559201 - 31559117
Alignment:
Q  211 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    |||||||||||||||||||| || | ||||| |||||| | |||| ||||||||||||||||||||| |||| ||||| ||||||    
T  31559201 caatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctc 31559117  T

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Target: scaffold0140 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 35887 - 35952
Alignment:
Q  211 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaa 276  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| ||| ||||||||||||||||    
T  35887 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaa 35952  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 1134480 - 1134564
Alignment:
Q  211 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 295  Q
    ||||||||||||||||||||  | | ||||| |||| | | |||| ||||||||||||||| ||||| |||| ||||| ||||||    
T  1134480 caatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctc 1134564  T

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