View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_high_10 (Length: 473)
Name: NF15999_high_10
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Complemental strand, 18663942 - 18663495
Alignment:
| Q |
16 |
cagaacaaaccaccagacaataatcctgtaggaaatatgaaccgtatccatgaatatcgagcaggagatacttcacttccagaaaataacatgatctatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663942 |
cagaacaaaccaccagacaataatcctgtaggaaatatgaaccgtatccatgaatatcgagcaggagatacttcacttccagaaaataacatgatctatg |
18663843 |
T |
|
| Q |
116 |
ttttgcttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagatgc |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663842 |
ttttgcttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagatgc |
18663743 |
T |
|
| Q |
216 |
tctccttggccacagtgagagacttgctattgctaagggtctccttaacagtccggctcgtagtaccatcagagtaattaagaatctccgtgtttgtggt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663742 |
tctccttggccacagtgagagacttgctattgctaagggtctccttaacagtccggctcgtagtaccatcagagtaattaagaatctccgtgtttgtggt |
18663643 |
T |
|
| Q |
316 |
gattgtcatactgcattgaagattatttctgatcttgtgggaagagaattcatcatccgagatgctaaaaggttccatcattttaaaaatgggctatgct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663642 |
gattgtcatactgcattgaagattatttctgatcttgtgggaagagaattcatcatccgagatgctaaaaggttccatcattttaaaaatgggctatgct |
18663543 |
T |
|
| Q |
416 |
cctgcagggattattggtgaacattaacctaggtactgtccacctttg |
463 |
Q |
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| T |
18663542 |
cctgcagggattattggtgaacattaacctaggtactgtccacctttg |
18663495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Original strand, 15079886 - 15080333
Alignment:
| Q |
16 |
cagaacaaaccaccagacaataatcctgtaggaaatatgaaccgtatccatgaatatcgagcaggagatacttcacttccagaaaataacatgatctatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079886 |
cagaacaaaccaccagacaataatcctgtaggaaatatgaaccgtatccatgaatatcgagcaggagatacttcacttccagaaaataacatgatctatg |
15079985 |
T |
|
| Q |
116 |
ttttgcttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagatgc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079986 |
ctttgcttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagatgc |
15080085 |
T |
|
| Q |
216 |
tctccttggccacagtgagagacttgctattgctaagggtctccttaacagtccggctcgtagtaccatcagagtaattaagaatctccgtgtttgtggt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080086 |
tctccttggccacagtgagagacttgctattgctaagggtctccttaacagtccggctcgtagtaccatcagagtaattaagaatctccgtgtttgtggt |
15080185 |
T |
|
| Q |
316 |
gattgtcatactgcattgaagattatttctgatcttgtgggaagagaattcatcatccgagatgctaaaaggttccatcattttaaaaatgggctatgct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080186 |
gattgtcatactgcattgaagattatttctgatcttgtgggaagagaattcatcatccgagatgctaaaaggttccatcattttaaaaatgggctatgct |
15080285 |
T |
|
| Q |
416 |
cctgcagggattattggtgaacattaacctaggtactgtccacctttg |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080286 |
cctgcagggattattggtgaacattaacctaggtactgtccacctttg |
15080333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 117 - 450
Target Start/End: Complemental strand, 7448859 - 7448529
Alignment:
| Q |
117 |
tttgcttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagatgct |
216 |
Q |
| |
|
|||||||||| ||||||| | ||| |||||||||| |||||||||||||||||| |||| | || |||||| ||||| |||||| |||||||||| | |
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| T |
7448859 |
tttgcttagaggtttgagagagcaaatgaaagaagatggctatattgcagagacgagatatgcgttgcatgacatagacgaggaaggcaaagaagatgtt |
7448760 |
T |
|
| Q |
217 |
ctccttggccacagtgagagacttgctattgctaagggtctccttaacagtccggctcgtagtaccatcagagtaattaagaatctccgtgtttgtggtg |
316 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| |||||| ||| |||||| |||||| || || ||||||||||||||| | ||| ||||| || |
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| T |
7448759 |
ctccttgcccacagtgagagacttgctgttgctaaaggtctctttagcagtcctgctcgttcaactattagagtaattaagaattttcgtatttgtcctg |
7448660 |
T |
|
| Q |
317 |
attgtcatactgcattgaagattatttctgatcttgtgggaagagaattcatcatccgagatgctaaaaggttccatcattttaaaaatgggctatgctc |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||| | | |||||||||||| ||||||||| | |||||||||| ||| ||||||||||||||||||||||| |
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| T |
7448659 |
attgtcatactgcactgaagattatttctaagatcgtgggaagagaactcatcatcc---aagctaaaaggtgccaccattttaaaaatgggctatgctc |
7448563 |
T |
|
| Q |
417 |
ctgcagggattattggtgaacattaacctaggta |
450 |
Q |
| |
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|||| |||||||| |||| || |||||||||| |
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| T |
7448562 |
ttgcaaggattatttttgaatatgaacctaggta |
7448529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 121 - 463
Target Start/End: Complemental strand, 7534404 - 7534062
Alignment:
| Q |
121 |
cttagacgtttgagggtgcagatgaaagaagctggctatattgcagagacaagattttgtttacatgacgtagaccaggaagataaagaagatgctctcc |
220 |
Q |
| |
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|||||| ||||||| ||||| ||||| |||||||||||||||||||| || | | || |||||| |||||||||||| |||||||||||||||| |
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| T |
7534404 |
cttagaggtttgagagtgcaaatgaaggaagctggctatattgcagatacggggcatgtgttgcatgacatagaccaggaaggcaaagaagatgctctcc |
7534305 |
T |
|
| Q |
221 |
ttggccacagtgagagacttgctattgctaagggtctccttaacagtccggctcgtagtaccatcagagtaattaagaatctccgtgtttgtggtgattg |
320 |
Q |
| |
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||| ||||| || |||||| ||| ||||| | |||||| |||||||| || |||| ||| || | ||||||| |||||| |||| ||||||||||||| |
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| T |
7534304 |
ttgcccacaatgtgagactggctgttgctcaaggtctctttaacagtaaggttcgttctactattaaagtaattcagaatcgccgtttttgtggtgattg |
7534205 |
T |
|
| Q |
321 |
tcatactgcattgaagattatttctgatcttgtgggaagagaattcatcatccgagatgctaaaaggttccatcattttaaaaatgggctatgctcctgc |
420 |
Q |
| |
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||| |||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||| | ||||||||| |
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|
| T |
7534204 |
tcacactgcagtgaagtttatttctaagcttgtgggaagagaattcatcatccgagatgctaaaaggttccaccatatgaataatgggttgtgctcctgc |
7534105 |
T |
|
| Q |
421 |
agggattattggtgaacattaacctaggtactgtccacctttg |
463 |
Q |
| |
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| ||||||||||||||||| |||||||| |||| ||||| |
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| T |
7534104 |
catggttattggtgaacattaatttaggtactatccatctttg |
7534062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 319 - 435
Target Start/End: Original strand, 24416850 - 24416966
Alignment:
| Q |
319 |
tgtcatactgcattgaagattatttctgatcttgtgggaagagaattcatcatccgagatgctaaaaggttccatcattttaaaaatgggctatgctcct |
418 |
Q |
| |
|
|||||||||| | ||||||||||||| || | ||||||||||| || ||||| ||||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
24416850 |
tgtcatactgtaatgaagattatttcggaaatagtgggaagagagtttgtcatctgagatcttaaagggttccatcattttaaaaatggactatgctccg |
24416949 |
T |
|
| Q |
419 |
gcagggattattggtga |
435 |
Q |
| |
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| |||||||||||||| |
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|
| T |
24416950 |
gacgggattattggtga |
24416966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 24416653 - 24416701
Alignment:
| Q |
113 |
atgttttgcttagacgtttgagggtgcagatgaaagaagctggctatat |
161 |
Q |
| |
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|||||||||||||||||||||| ||| | |||||| || |||||||||| |
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|
| T |
24416653 |
atgttttgcttagacgtttgagagtgtaaatgaaataaactggctatat |
24416701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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