View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_high_13 (Length: 392)
Name: NF15999_high_13
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 32668444 - 32668808
Alignment:
| Q |
20 |
aatatcgtgtctgatgtttgtggctttgtcggttctttttatgatgaaattataaaagaaaagtcttttcaaacacattgatattccttttttggttaat |
119 |
Q |
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| T |
32668444 |
aatatcgtgtctgatgtttgtgtctttgtcggttctttttatgatgaaattataaaagaaaagtcttttcaaacacattgatattccctttttgattaat |
32668543 |
T |
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| Q |
120 |
tcctaaagtttgaattttactaacttacaaaaacagaaaatatgtattcaaacaaatttacacctagaaagtaactaaaatgcatcaataaaatagaaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32668544 |
tcctaaagtttgaattttactaacttacaaaaacagaaaatatgtattcaaacaaatttacaactagaaagtaactaaaatgcatcaataaaatagaaga |
32668643 |
T |
|
| Q |
220 |
aatttcatttcacctggcattttcttataaaagggacaagaacgagtaaccctattctctccatgaaaactctttctcttcccagtagattttgaattct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32668644 |
aatttcatttcacctggcattttcttataaaagggacaagaacgagtaaccctcttctctccatgaaaactctttctcttcccagtagattttgaattct |
32668743 |
T |
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| Q |
320 |
caacaactttccctgtatcacgcaaaattgaaccccaatttccacgtttcacactcttcatctca |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32668744 |
caacaactttccctgtatcacgcaaaattgaaccccaatttccacgtttcacactcttcttctca |
32668808 |
T |
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