View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15999_high_18 (Length: 371)
Name: NF15999_high_18
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 136 - 337
Target Start/End: Complemental strand, 9965182 - 9964984
Alignment:
| Q |
136 |
cactaaacattcaaacattgatatcaaagtaaaataaaatgaatgtctagcatgaatctactttagatgtggtattactgctgcaaacacacaaatacgt |
235 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9965182 |
cactaaacattcacacattgatatcaaagtaaaagaaaatgaatgtctagcatgaatctactttagatgtggtattactgctgcaaacacacaaatacgt |
9965083 |
T |
|
| Q |
236 |
gaattaggtctaagttcgaatatggaattatgtagttctcactatttaaggcatatgagtctaatcattaaactacttaaaaaatatagtgtaaactagt |
335 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9965082 |
ga---aggtctaagttcgaatatggaattatgtagttctcactacttaaggcatatgagtctaatcattaaactacttaaaaaatatagtgtaaactagt |
9964986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 9959055 - 9958989
Alignment:
| Q |
270 |
gttctcactatttaaggcatatgagtctaatcattaaactacttaaaaaatatagtgtaaactagta |
336 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
9959055 |
gttctcactagttaaggcacatgaatctaatcattaaactacttaaaaaatagattgtaaactagta |
9958989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 9965297 - 9965256
Alignment:
| Q |
24 |
tcatacccattctaaactaaaataagattaatacccgttagc |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9965297 |
tcatacccattctaaactaaaataagattaatacccgttagc |
9965256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University