View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15999_high_19 (Length: 352)

Name: NF15999_high_19
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15999_high_19
NF15999_high_19
[»] chr1 (14 HSPs)
chr1 (20-345)||(6403808-6404133)
chr1 (20-214)||(6415227-6415423)
chr1 (20-222)||(6420377-6420580)
chr1 (20-174)||(6379020-6379175)
chr1 (20-164)||(6380248-6380392)
chr1 (20-222)||(6357303-6357506)
chr1 (20-143)||(6358757-6358880)
chr1 (20-101)||(6399329-6399410)
chr1 (20-103)||(6348755-6348838)
chr1 (20-126)||(6391042-6391148)
chr1 (20-153)||(6366650-6366783)
chr1 (20-124)||(6372230-6372333)
chr1 (20-91)||(6427847-6427918)
chr1 (24-153)||(6347614-6347743)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 6404133 - 6403808
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6404133 taagggtcacattttcaggcaacttgttctttaaattgtctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 6404034  T
Q  120 cattgaattgaagagtctaagagatgttggtagaatatacatatacctaagagcttctcataactattttcttataaaacagctattaatcatctcaagt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6404033 cattgaattgaagagtctaagagatgttggtagaatatacatatacctaagagcttctcataactattttcttataaaacagctattaatcatctcaagt 6403934  T
Q  220 acacttgatgtgttagcctcactggaaagagtttagccttgtaaccttaaattacagagttcgtaatataaaaataattaatgacaaatgttagtacgtt 319  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6403933 acacttgaggtgttagcctcactggaaagagtttagccttgtaaccttaaattacagagttcgtaatataaaaataattaatgacaaatgttagtacgtt 6403834  T
Q  320 agttggtatgattttctcctttgcta 345  Q
    ||||||||||||||||||||||||||    
T  6403833 agttggtatgattttctcctttgcta 6403808  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 6415423 - 6415227
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatatt--aaga 117  Q
    |||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||| | ||| |||  ||||    
T  6415423 taagggtcacattttctggcaacttcttctttaagttgtctgaaaatgttttaggaagtgcctgcaattaaaatacaaatttccatctgagattaaaaga 6415324  T
Q  118 tacattgaattgaagagtctaagagatgttggtagaatatacatatacctaagagcttctcataactattttcttataaaacagctattaatcatct 214  Q
    ||||||||  |||||||  ||| ||||||||||||||||||||||||||||| ||||   |||||  |||| |||  ||||||||||||||||||||    
T  6415323 tacattgagctgaagagcgtaacagatgttggtagaatatacatatacctaatagctaaccataataatttgcttgaaaaacagctattaatcatct 6415227  T

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Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 6420580 - 6420377
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatatt--aaga 117  Q
    |||||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| | ||| |||  ||||    
T  6420580 taagggtcacattttctggcaacttcttttttaaattgtctgaaaatgttttaggaagtgcctgcagttaaaatataaatttccatctgagattaaaaga 6420481  T
Q  118 tacattgaattgaagagtctaagagatgttggtagaatatacatatacctaagagcttctcataactattttcttataaaacagctattaatcatctcaa 217  Q
    ||||||||  |||||||  ||| |||||||||||||||||||| |||||||| ||||   |||||  |||| |||  |||||||||||||||||||||||    
T  6420480 tacattgagctgaagagcgtaacagatgttggtagaatataca-atacctaatagctaaccataataatttgcttgaaaaacagctattaatcatctcaa 6420382  T
Q  218 gtaca 222  Q
    |||||    
T  6420381 gtaca 6420377  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 6379175 - 6379020
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 119  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||||||| ||||| | || || |    
T  6379175 taagggtcacatttgctggcaacttgttctttaaattgtctgaaaatgttttaggaagtgcctgcaataaaagtataaatttccatttgagactatgaaa 6379076  T
Q  120 cattgaattgaagagtctaagagatgttggtagaat-atacatatacctaagagct 174  Q
     |||||  |||||| ||||||||||||||||||| | ||| || ||||||||||||    
T  6379075 tattgagctgaagaatctaagagatgttggtagactaatatatctacctaagagct 6379020  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 6380392 - 6380248
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatatt--aaga 117  Q
    |||||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| | ||| |||  ||||    
T  6380392 taagggtcacattttctggcaacttcttctttaaattgtctgagaatgttttaggaagtgcctgcaattaaaatataaatttccatctgagattaaaaga 6380293  T
Q  118 tacattgaattgaagagtctaagagatgttggtagaatatacatata 164  Q
    ||||||||  ||||||| | |  |||| ||||||||||||| |||||    
T  6380292 tacattgagctgaagagccca--agatattggtagaatatatatata 6380248  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 6357506 - 6357303
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 119  Q
    |||||||||| ||  | |||||||| |||||||||||| ||||||||||||| ||||| ||||||||| ||   ||| ||||||  |||| | ||||| |    
T  6357506 taagggtcacgttgcctggcaacttcttctttaaattgtctgaaaatgttttcggaagggcctgcaataaatttatagatttccagttgagactaagaaa 6357407  T
Q  120 cattgaattgaagagtctaagagatgttggtagaat-atacatatacctaagagcttctcataactattttcttataaaacagctattaatcatctcaag 218  Q
    |||||| ||||||| ||||||||||||||||||| | ||| || ||| ||||||||   ||||| |||||||||   ||||||| | |||||||||||||    
T  6357406 cattgagttgaagaatctaagagatgttggtagattaatatatctacataagagctaaacataagtattttcttgagaaacagccagtaatcatctcaag 6357307  T
Q  219 taca 222  Q
    ||||    
T  6357306 taca 6357303  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 6358880 - 6358757
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 119  Q
    |||||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||| |||  |||||||||  ||||| ||||| | |    
T  6358880 taagggtcacattttctggcaacttcttatttaaattgtctgaaaatgttttaggaagtgcctgcaataaaagtataaatttcaatttgagattaaaaaa 6358781  T
Q  120 cattgaattgaagagtctaagaga 143  Q
    ||||||  |||||| |||||||||    
T  6358780 cattgagctgaagaatctaagaga 6358757  T

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Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 6399410 - 6399329
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaattt 101  Q
    |||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  6399410 taagagtcacattttctggcaacttcttctttaaattgtctgaaaatgttttaggaagtgcctgcaattaaaatataaattt 6399329  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 6348838 - 6348755
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttcc 103  Q
    |||||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||| |||  ||||||||||    
T  6348838 taagggtcacattttctggcaacttcttatttaaattgtctgaaaatgttttaggaagtgcctgcaataaaagtataaatttcc 6348755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 6391148 - 6391042
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 119  Q
    |||||||||||||||| |||| ||| ||||| |||||| |||| |||||| ||||||||||||||||| |||  |||||||||| ||||| |||| ||||    
T  6391148 taagggtcacattttctggcagcttcttcttcaaattgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgata 6391049  T
Q  120 cattgaa 126  Q
    |||||||    
T  6391048 cattgaa 6391042  T

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Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 6366783 - 6366650
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 119  Q
    |||| ||||||||||| |||||||| |||||||||||| | || ||| |||||||||| ||||||||| ||   ||||||||||  |||| | |||||||    
T  6366783 taagtgtcacattttctggcaacttcttctttaaattgtccgagaatattttaggaagggcctgcaataaatttataaatttccagttgagactaagata 6366684  T
Q  120 cattgaattgaagagtctaagagatgttggtaga 153  Q
    ||||||  |||||| ||||||||||| |||||||    
T  6366683 cattgagctgaagaatctaagagatgatggtaga 6366650  T

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Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 6372333 - 6372230
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 119  Q
    |||||||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||||||||| || |||  |||||||||| ||||| |||||||||    
T  6372333 taagggtcacattttctggcaacttcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaagata 6372235  T
Q  120 cattg 124  Q
     ||||    
T  6372234 aattg 6372230  T

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Target: chr1; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 6427918 - 6427847
Alignment:
Q  20 taagggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaa 91  Q
    ||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| ||||    
T  6427918 taaggttcacattttcaggcaacttcttttttaaattgtctgaaaatgttttaggaagtgcctgcaaataaa 6427847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 6347743 - 6347614
Alignment:
Q  24 ggtcacattttcaggcaacttgttctttaaattgcctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagatacatt 123  Q
    |||||||||||| || ||||| |||||||||||| ||||||||||||| ||||||||||||||  |||  |||||| ||| ||| | | ||| | |||||    
T  6347743 ggtcacattttctggtaacttcttctttaaattgtctgaaaatgttttcggaagtgcctgcaacaaaagtataaatgtccatttaagactaataaacatt 6347644  T
Q  124 gaattgaagagtctaagagatgttggtaga 153  Q
    ||  ||| || |||||||||| ||||||||    
T  6347643 gagctgatgaatctaagagattttggtaga 6347614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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