View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_high_20 (Length: 348)
Name: NF15999_high_20
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 13860415 - 13860738
Alignment:
| Q |
17 |
aattttcttgctgatgataacttctcaatatcttaactaaaataaacttgccaataatgttggaaggtaaatgtgaaatatatacgaatagccgtgggaa |
116 |
Q |
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| T |
13860415 |
aattttcttgctgatgataacttctcaatatcttaactaaaataaacttgccaataatgttggaaggtaaatgtgaaatatatacgaatagccgtgggaa |
13860514 |
T |
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| Q |
117 |
aatgtcgttgcagaagaggcttcgcaatcacacaagaagaagaatttccaaccttatgctaacccctcctctgcaactatctcccctgaattatttcctt |
216 |
Q |
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| T |
13860515 |
aatgtcgttgcagaagaggcttcgcaatcacacaagaagaagaatttccaaccttatgctaacccctcctctgcaactatctcccctgaattatttcctt |
13860614 |
T |
|
| Q |
217 |
ctttatttgtttctaaggcagaataataatcttcttcttgtttttgtacgttccccaaaaatgtatgtgttataccataatgacatgatacgttattatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13860615 |
ctttatttgtttctaaggcagaataataatcttcttcttgtttttgtacgttccccaaaaatgtatgtgttataccataatgacatgatacgttattatc |
13860714 |
T |
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| Q |
317 |
aacatggtcatgttcatctcactc |
340 |
Q |
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||||||||||||||||| |||||| |
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| T |
13860715 |
aacatggtcatgttcatgtcactc |
13860738 |
T |
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