View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_high_22 (Length: 340)
Name: NF15999_high_22
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 39895013 - 39895236
Alignment:
| Q |
36 |
tcattaaaatctaggagcatgttattgtgctgtataaatccataacccacaaagtaaattgcactacactacacaacacaaaaacgtacattcacattct |
135 |
Q |
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| T |
39895013 |
tcattaaaatctaggagcatgttattgtgctgtataaatccataacccacagagtaaattgcactacactacacaacacaaaaacgtacattcacattct |
39895112 |
T |
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| Q |
136 |
tctgactcatacatcttgagcttgtggggtcatggcccatactcttctattttagtttcacactttcccaacatatatattctcaataatattaccttcc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39895113 |
tctgactcatacatcttgagcttgtggggtcatggcccatactcttctattttagtttcacactttcccaacatatatattctcaataatattaccttcc |
39895212 |
T |
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| Q |
236 |
atccatttaaattagttcacatca |
259 |
Q |
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|||||||||||||||||||||||| |
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| T |
39895213 |
atccatttaaattagttcacatca |
39895236 |
T |
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