View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_high_27 (Length: 301)
Name: NF15999_high_27
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 29426273 - 29426069
Alignment:
| Q |
22 |
tatacatagaacatatttaagaatgaggtaacttttagcgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagcca |
121 |
Q |
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| T |
29426273 |
tatacataggacatatttaagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagcca |
29426174 |
T |
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| Q |
122 |
tgattctaccaggctcagcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgc |
221 |
Q |
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| T |
29426173 |
tgattctaccaggctcagcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgc |
29426074 |
T |
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| Q |
222 |
taaga |
226 |
Q |
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||||| |
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| T |
29426073 |
taaga |
29426069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 61 - 291
Target Start/End: Complemental strand, 29461501 - 29461274
Alignment:
| Q |
61 |
gaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccattaagaccattaa |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
29461501 |
gaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaa |
29461402 |
T |
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| Q |
161 |
gtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgctaagaagcttcctgatctattaagaccacaacatgattc |
260 |
Q |
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| T |
29461401 |
gtaacctcttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcc---tctattaaggccacaatatgcttc |
29461305 |
T |
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| Q |
261 |
ctcttcactctcacccatgttgcatcctttg |
291 |
Q |
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||| ||||||||| |||||||| |||||||| |
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| T |
29461304 |
ctcatcactctcatccatgttgtatcctttg |
29461274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
75 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
128 |
Q |
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|||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
85 |
gtggattttccagagccagaaggacccataatagcca |
121 |
Q |
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| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 36068412 - 36068332
Alignment:
| Q |
85 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccattaagaccattaagtaac |
165 |
Q |
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|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| | | ||||| ||||||| |
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| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaac |
36068332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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