View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_high_29 (Length: 266)
Name: NF15999_high_29
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 49008006 - 49008246
Alignment:
| Q |
15 |
acatattacattcaaactaagtttccatctannnnnnngaatccaattaatggagaacttatcaaggatttcattaagtgcaatactaatccaaaagcaa |
114 |
Q |
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| T |
49008006 |
acatattacattcaaactaagtttccatctatttttttgaatccaattaatggagaacttatcaaggatttcattaagtgcaatactaatccaaaagcaa |
49008105 |
T |
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| Q |
115 |
gcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaa |
214 |
Q |
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| T |
49008106 |
gcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaa |
49008205 |
T |
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| Q |
215 |
accagacatcacagcaccaggaacactaatcttagcttcat |
255 |
Q |
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| T |
49008206 |
accagacatcacagcaccaggaacactaatcttagcttcat |
49008246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 34962886 - 34962792
Alignment:
| Q |
129 |
aaaactgttttaggtacaaaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacat |
223 |
Q |
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| T |
34962886 |
aaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctgacat |
34962792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 21687241 - 21687144
Alignment:
| Q |
154 |
caccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagct |
251 |
Q |
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| T |
21687241 |
cacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacctgacatcactgctcctggtacatcaatcttagct |
21687144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 19375962 - 19375883
Alignment:
| Q |
147 |
aaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcac |
226 |
Q |
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| T |
19375962 |
aaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccgacatcac |
19375883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 8962996 - 8963078
Alignment:
| Q |
147 |
aaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagc |
229 |
Q |
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| T |
8962996 |
aaaccagtacctagggtggatttttatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattacagc |
8963078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 8958005 - 8958061
Alignment:
| Q |
170 |
ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcac |
226 |
Q |
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| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcac |
8958061 |
T |
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