View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15999_high_37 (Length: 244)
Name: NF15999_high_37
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 43860954 - 43860738
Alignment:
| Q |
10 |
agtgagatgaatatctatggttgcgtttcaggggtgtgacgcatcggttttgttggagtccactgctggtaacacggcggagaaggatgccattcctaat |
109 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43860954 |
agtgacatgcatatctatggttgcgtttcaggggtgtgacgcatcggttttgttggagtccactgctggtaacacggcggagaaggatgccattcctaat |
43860855 |
T |
|
| Q |
110 |
ttatcattagcaggctttgatgtaatagaagacataaaagaagctttggaggaaaaatgtccaggaattgtttcatgtgctgatatactcacattggcta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43860854 |
ttatcattagcaggctttgatgtaatagaagacataaaagaagctttggaggaaaaatgtccaggaattgtttcatgtgctgatatactcacattggcta |
43860755 |
T |
|
| Q |
210 |
ctagagatgctgttagt |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43860754 |
ctagagatgctgttagt |
43860738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University